LOCUS BC013682 1160 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox A5, mRNA (cDNA clone MGC:9376 IMAGE:3863578),
complete cds.
ACCESSION BC013682
VERSION BC013682.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1160)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1160)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: i Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24497516.
FEATURES Location/Qualifiers
source 1..1160
/db_xref="H-InvDB:HIT000036322"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9376 IMAGE:3863578"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1160
/gene="HOXA5"
/gene_synonym="HOX1.3"
/gene_synonym="MGC9376"
/db_xref="GeneID:3202"
/db_xref="HGNC:HGNC:5106"
/db_xref="MIM:142952"
CDS 49..861
/gene="HOXA5"
/gene_synonym="HOX1.3"
/gene_synonym="MGC9376"
/codon_start=1
/product="homeobox A5"
/protein_id="AAH13682.1"
/db_xref="GeneID:3202"
/db_xref="HGNC:HGNC:5106"
/db_xref="MIM:142952"
/translation="MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGR
YGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLP
CSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQA
SAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNR
YLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP"
BASE COUNT 296 a 338 c 299 g 227 t
ORIGIN
1 gcacaaacga ccgcgagcca caaatcaagc acacatatca aaaaacaaat gagctcttat
61 tttgtaaact cattttgcgg tcgctatcca aatggcccgg actaccagtt gcataattat
121 ggagatcata gttccgtgag cgagcaattc agggactcgg cgagcatgca ctccggcagg
181 tacggctacg gctacaatgg catggatctc agcgtcggcc gctcgggctc cggccacttt
241 ggctccggag agcgcgcccg cagctacgct gccagcgcca gcgcggcgcc cgccgagccc
301 aggtacagcc agccggccac gtccacgcac tctcctcagc ccgatccgct gccctgctcc
361 gccgtggccc cctcgcccgg cagcgacagc caccacggcg ggaaaaactc cctaagcaac
421 tccagcggcg cctcggccga cgccggcagc acccacatca gcagcagaga gggggttggc
481 acggcgtccg gagccgagga ggacgcccct gccagcagcg agcaggcgag tgcgcagagc
541 gagccgagcc cggcgccgcc cgcccaaccc cagatctacc cctggatgcg caagctgcac
601 ataagtcatg acaacatagg cggcccggaa ggcaaaaggg cccggacggc ctacacgcgc
661 taccagaccc tggagctgga gaaggagttc cacttcaacc gttacctgac ccgcagaagg
721 aggattgaaa tagcacatgc tctttgcctc tccgagagac aaattaaaat ctggttccaa
781 aaccggagaa tgaagtggaa aaaagataat aagctgaaaa gcatgagcat ggccgcggca
841 ggaggggcct tccgtccctg agtatctgag cgtttaaagt actgagcagt attagcggat
901 cccgcgtagt gtcagtacta aggtgacttt ctgaaactcc cttgtgttcc ttctgtgaag
961 aagccctgtt ctcgttgccc taattcatct tttaatcatg agcctgttta ttgccattat
1021 agcgcctgta taagtagatc tgctttctgt tcatctcttt gtcctgaatg gctttgtctt
1081 gaaaaaaaat agatgtttta acttatttat atgaagcaag ctgtgttact tgaagtaact
1141 ataacaaaaa aaaaaaaaaa
//