LOCUS BC013184 1508 bp mRNA linear HUM 04-OCT-2003 DEFINITION Homo sapiens major histocompatibility complex, class II, DP beta 1, mRNA (cDNA clone MGC:17212 IMAGE:4341117), complete cds. ACCESSION BC013184 VERSION BC013184.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1508) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1508) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 26 Row: i Column: 24 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 24797075. FEATURES Location/Qualifiers source 1..1508 /db_xref="H-InvDB:HIT000036169" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17212 IMAGE:4341117" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1508 /gene="HLA-DPB1" /gene_synonym="HLA-DP1B" /db_xref="GeneID:3115" /db_xref="MIM:142858" CDS 52..828 /gene="HLA-DPB1" /gene_synonym="HLA-DP1B" /codon_start=1 /product="HLA-DPB1 protein" /protein_id="AAH13184.1" /db_xref="GeneID:3115" /db_xref="MIM:142858" /translation="MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYVYQGRQEC YAFNGTQRFLERYIYNREEYARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVP DRVCRHNYELDEAVTLQRRVQPKVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFL NGQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYICQVEHTSLDSPVTVEWKAQ SDSAQSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRGSA" misc_feature 178..402 /gene="HLA-DPB1" /gene_synonym="HLA-DP1B" /note="MHC_II_beta; Region: Class II histocompatibility antigen, beta domain" /db_xref="CDD:pfam00969" misc_feature 466..681 /gene="HLA-DPB1" /gene_synonym="HLA-DP1B" /note="IGc1; Region: Immunoglobulin C-Type" /db_xref="CDD:smart00407" BASE COUNT 398 a 368 c 366 g 376 t ORIGIN 1 cttcttttcc tgactgcagc tcttttcatt ttgccatcct tttccagctc catgatggtt 61 ctgcaggttt ctgcggcccc ccggacagtg gctctgacgg cgttactgat ggtgctgctc 121 acatctgtgg tccagggcag ggccactcca gagaattacg tgtaccaggg acggcaggaa 181 tgctacgcgt ttaatgggac acagcgcttc ctggagagat acatctacaa ccgggaggag 241 tacgcgcgct tcgacagcga cgtgggggag ttccgggcgg tgacggagct ggggcggcct 301 gctgcggagt actggaacag ccagaaggac atcctggagg agaagcgggc agtgccggac 361 agggtatgca gacacaacta cgagctggac gaggccgtga ccctgcagcg ccgagtccag 421 cctaaggtga acgtttcccc ctccaagaag gggcccctgc agcaccacaa cctgcttgtc 481 tgccacgtga cagatttcta cccaggcagc attcaagtcc gatggttcct gaatggacag 541 gaggaaacag ctggggtcgt gtccaccaac ctgatccgta atggagactg gaccttccag 601 atcctggtga tgctggaaat gaccccccag cagggagacg tctacatctg ccaagtggag 661 cacaccagcc tggacagtcc tgtcaccgtg gagtggaagg cacagtctga ttctgcccag 721 agtaagacat tgacgggagc tgggggcttc gtgctggggc tcatcatctg tggagtgggc 781 atcttcatgc acaggaggag caagaaagtt caacgaggat ctgcataaac agggttcctg 841 acctcaccga aaagactaat gtgccttaga acaagcattt gctgtgtttt gttaacacct 901 ggttccagga cagaccctca gcttcccaag aggatactgc tgccaagaag ttgctctgaa 961 gtcagtttct atcgttctgc tctttgattc aaagcactgt ttctctcact gggcctccaa 1021 ccatgttccc ttcttcttag caccacaaat aatcaaaacc caacataagt gtttgctttc 1081 ctttaaaaat atgcatcaaa tcgtctctca ttacttttct ctgagggttt tagtaaacag 1141 taggagttaa taaagaagtt cattttggtt tacacgtagg aaagaagaga agcatgaaag 1201 tggagatatg ttaactattg tataatgtgg cctgttatac atgacactct tctgaattga 1261 ctgtatttca gtgagctgcc cccaaatcaa gtttagtgcc ctcatccatt tatgtctcag 1321 accgctattc ttaactattc aatggtgagc agactgcaaa tctgcctgat aggacccata 1381 ttcccacagc actaattcaa catatatctt actgagagca tgttttatca ttaccattaa 1441 gaagttaaat gaacatcaga atttaaaatc ataaatataa tctaatacac tttaaaaaaa 1501 aaaaaaaa //