LOCUS BC013184 1508 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens major histocompatibility complex, class II, DP beta 1,
mRNA (cDNA clone MGC:17212 IMAGE:4341117), complete cds.
ACCESSION BC013184
VERSION BC013184.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1508)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1508)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: i Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24797075.
FEATURES Location/Qualifiers
source 1..1508
/db_xref="H-InvDB:HIT000036169"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17212 IMAGE:4341117"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1508
/gene="HLA-DPB1"
/gene_synonym="HLA-DP1B"
/db_xref="GeneID:3115"
/db_xref="MIM:142858"
CDS 52..828
/gene="HLA-DPB1"
/gene_synonym="HLA-DP1B"
/codon_start=1
/product="HLA-DPB1 protein"
/protein_id="AAH13184.1"
/db_xref="GeneID:3115"
/db_xref="MIM:142858"
/translation="MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYVYQGRQEC
YAFNGTQRFLERYIYNREEYARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVP
DRVCRHNYELDEAVTLQRRVQPKVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFL
NGQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYICQVEHTSLDSPVTVEWKAQ
SDSAQSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRGSA"
misc_feature 178..402
/gene="HLA-DPB1"
/gene_synonym="HLA-DP1B"
/note="MHC_II_beta; Region: Class II histocompatibility
antigen, beta domain"
/db_xref="CDD:pfam00969"
misc_feature 466..681
/gene="HLA-DPB1"
/gene_synonym="HLA-DP1B"
/note="IGc1; Region: Immunoglobulin C-Type"
/db_xref="CDD:smart00407"
BASE COUNT 398 a 368 c 366 g 376 t
ORIGIN
1 cttcttttcc tgactgcagc tcttttcatt ttgccatcct tttccagctc catgatggtt
61 ctgcaggttt ctgcggcccc ccggacagtg gctctgacgg cgttactgat ggtgctgctc
121 acatctgtgg tccagggcag ggccactcca gagaattacg tgtaccaggg acggcaggaa
181 tgctacgcgt ttaatgggac acagcgcttc ctggagagat acatctacaa ccgggaggag
241 tacgcgcgct tcgacagcga cgtgggggag ttccgggcgg tgacggagct ggggcggcct
301 gctgcggagt actggaacag ccagaaggac atcctggagg agaagcgggc agtgccggac
361 agggtatgca gacacaacta cgagctggac gaggccgtga ccctgcagcg ccgagtccag
421 cctaaggtga acgtttcccc ctccaagaag gggcccctgc agcaccacaa cctgcttgtc
481 tgccacgtga cagatttcta cccaggcagc attcaagtcc gatggttcct gaatggacag
541 gaggaaacag ctggggtcgt gtccaccaac ctgatccgta atggagactg gaccttccag
601 atcctggtga tgctggaaat gaccccccag cagggagacg tctacatctg ccaagtggag
661 cacaccagcc tggacagtcc tgtcaccgtg gagtggaagg cacagtctga ttctgcccag
721 agtaagacat tgacgggagc tgggggcttc gtgctggggc tcatcatctg tggagtgggc
781 atcttcatgc acaggaggag caagaaagtt caacgaggat ctgcataaac agggttcctg
841 acctcaccga aaagactaat gtgccttaga acaagcattt gctgtgtttt gttaacacct
901 ggttccagga cagaccctca gcttcccaag aggatactgc tgccaagaag ttgctctgaa
961 gtcagtttct atcgttctgc tctttgattc aaagcactgt ttctctcact gggcctccaa
1021 ccatgttccc ttcttcttag caccacaaat aatcaaaacc caacataagt gtttgctttc
1081 ctttaaaaat atgcatcaaa tcgtctctca ttacttttct ctgagggttt tagtaaacag
1141 taggagttaa taaagaagtt cattttggtt tacacgtagg aaagaagaga agcatgaaag
1201 tggagatatg ttaactattg tataatgtgg cctgttatac atgacactct tctgaattga
1261 ctgtatttca gtgagctgcc cccaaatcaa gtttagtgcc ctcatccatt tatgtctcag
1321 accgctattc ttaactattc aatggtgagc agactgcaaa tctgcctgat aggacccata
1381 ttcccacagc actaattcaa catatatctt actgagagca tgttttatca ttaccattaa
1441 gaagttaaat gaacatcaga atttaaaatc ataaatataa tctaatacac tttaaaaaaa
1501 aaaaaaaa
//