LOCUS BC012422 1422 bp mRNA linear HUM 30-DEC-2006 DEFINITION Homo sapiens vacuolar protein sorting 16 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:3865353), partial cds. ACCESSION BC012422 VERSION BC012422.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1422) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1422) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 21 Row: k Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18450367. FEATURES Location/Qualifiers source 1..1422 /db_xref="H-InvDB:HIT000087848" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3865353" /tissue_type="Ovary, adenocarcinoma" /clone_lib="NIH_MGC_66" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..1422 /gene="VPS16" /gene_synonym="hVPS16" /db_xref="GeneID:64601" /db_xref="HGNC:HGNC:14584" /db_xref="MIM:608550" CDS <1..1249 /gene="VPS16" /gene_synonym="hVPS16" /codon_start=2 /product="VPS16 protein" /protein_id="AAH12422.1" /db_xref="GeneID:64601" /db_xref="HGNC:HGNC:14584" /db_xref="MIM:608550" /translation="LRVLNAVRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQ ICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARA YGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNE LNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQDDNHQELGSFHIRASYAAEE RIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLEDELGGLQLDLSLHDTV TTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLP FVEICMKQHNKYEAKKYASRVGPEQKVKALLLVGDVAQAADVAIEHRNEADLSLVLSH CTGATDGATADKIQRARAQAQKK" BASE COUNT 360 a 371 c 404 g 287 t ORIGIN 1 cctgcgtgtg ctcaatgctg ttcgggacta tcacatcggg atcccgctca cctatagcca 61 atataagcag ctcaccatcc aggtgctgct ggacaggctc gtgttgcgga gactttaccc 121 cctggccatc cagatatgcg agtacttgcg ccttcctgaa gtacagggcg tcagcaggat 181 cctggcccac tgggcctgct acaaggtgca acagaaggat gtctcagatg aggatgtggc 241 tcgagccatt aaccagaagc tgggggacac gcctggtgtc tcttactccg acattgctgc 301 acgagcctat ggttgtggcc gcacggagct ggccatcaag ctgctggagt atgagccacg 361 ctcaggggag caggtacccc ttctcctaaa gatgaagagg agcaaactgg cactaagcaa 421 ggccatcgag agcggggaca ctgacctggt gttcacggtg ttgctgcacc tgaagaacga 481 gctgaaccga ggagattttt tcatgaccct tcggaatcag cccatggccc tcagtttgta 541 ccgacagttc tgtaagcatc aggagctaga gacgctgaag gacctttaca atcaggatga 601 caatcaccag gaattgggca gcttccacat ccgagccagc tatgctgcag aagagcgtat 661 tgaggggcga gtagcagctc tgcagacagc cgccgatgcc ttctacaagg ccaagaatga 721 gtttgcagcc aaggctacag aggatcaaat gcggctccta cggctgcagc ggcgcctaga 781 agacgagctg gggggcttgc agttagacct gtctctacat gacacagtta ccaccctcat 841 tcttggcggt cacaacaagc gtgcagagca gctggcacgt gacttccgca tccctgacaa 901 gaggctctgg tggctgaagc tgactgccct ggcagatttg gaagattggg aagagctaga 961 gaagttttcc aagagcaaga aatcacccat tggctacctg ccttttgtgg agatctgcat 1021 gaaacaacat aacaaatacg aagccaagaa gtatgcttcc cgcgtgggtc ccgagcagaa 1081 ggtcaaggct ttgcttcttg ttggcgatgt ggctcaggct gcagatgtgg ccatcgaaca 1141 ccggaatgag gctgatctga gcctcgtatt gtcccactgc acgggagcca cagatggggc 1201 cacagctgac aagattcaac gggccagggc acaagcccag aagaagtgag gagtccatcc 1261 tgtacatctc aagcaagggg ttcctcccct agcacctggg cttggcagaa gggccatagt 1321 tcatccagct cctcccctag agcaatgctg aggagcgggg gcatggtagc agggctgtct 1381 ggttttaaat aaagttggaa cacctaaaaa aaaaaaaaaa aa //