LOCUS BC012422 1422 bp mRNA linear HUM 30-DEC-2006
DEFINITION Homo sapiens vacuolar protein sorting 16 homolog (S. cerevisiae),
mRNA (cDNA clone IMAGE:3865353), partial cds.
ACCESSION BC012422
VERSION BC012422.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1422)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1422)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: k Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18450367.
FEATURES Location/Qualifiers
source 1..1422
/db_xref="H-InvDB:HIT000087848"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3865353"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1422
/gene="VPS16"
/gene_synonym="hVPS16"
/db_xref="GeneID:64601"
/db_xref="HGNC:HGNC:14584"
/db_xref="MIM:608550"
CDS <1..1249
/gene="VPS16"
/gene_synonym="hVPS16"
/codon_start=2
/product="VPS16 protein"
/protein_id="AAH12422.1"
/db_xref="GeneID:64601"
/db_xref="HGNC:HGNC:14584"
/db_xref="MIM:608550"
/translation="LRVLNAVRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQ
ICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARA
YGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNE
LNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQDDNHQELGSFHIRASYAAEE
RIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLEDELGGLQLDLSLHDTV
TTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLP
FVEICMKQHNKYEAKKYASRVGPEQKVKALLLVGDVAQAADVAIEHRNEADLSLVLSH
CTGATDGATADKIQRARAQAQKK"
BASE COUNT 360 a 371 c 404 g 287 t
ORIGIN
1 cctgcgtgtg ctcaatgctg ttcgggacta tcacatcggg atcccgctca cctatagcca
61 atataagcag ctcaccatcc aggtgctgct ggacaggctc gtgttgcgga gactttaccc
121 cctggccatc cagatatgcg agtacttgcg ccttcctgaa gtacagggcg tcagcaggat
181 cctggcccac tgggcctgct acaaggtgca acagaaggat gtctcagatg aggatgtggc
241 tcgagccatt aaccagaagc tgggggacac gcctggtgtc tcttactccg acattgctgc
301 acgagcctat ggttgtggcc gcacggagct ggccatcaag ctgctggagt atgagccacg
361 ctcaggggag caggtacccc ttctcctaaa gatgaagagg agcaaactgg cactaagcaa
421 ggccatcgag agcggggaca ctgacctggt gttcacggtg ttgctgcacc tgaagaacga
481 gctgaaccga ggagattttt tcatgaccct tcggaatcag cccatggccc tcagtttgta
541 ccgacagttc tgtaagcatc aggagctaga gacgctgaag gacctttaca atcaggatga
601 caatcaccag gaattgggca gcttccacat ccgagccagc tatgctgcag aagagcgtat
661 tgaggggcga gtagcagctc tgcagacagc cgccgatgcc ttctacaagg ccaagaatga
721 gtttgcagcc aaggctacag aggatcaaat gcggctccta cggctgcagc ggcgcctaga
781 agacgagctg gggggcttgc agttagacct gtctctacat gacacagtta ccaccctcat
841 tcttggcggt cacaacaagc gtgcagagca gctggcacgt gacttccgca tccctgacaa
901 gaggctctgg tggctgaagc tgactgccct ggcagatttg gaagattggg aagagctaga
961 gaagttttcc aagagcaaga aatcacccat tggctacctg ccttttgtgg agatctgcat
1021 gaaacaacat aacaaatacg aagccaagaa gtatgcttcc cgcgtgggtc ccgagcagaa
1081 ggtcaaggct ttgcttcttg ttggcgatgt ggctcaggct gcagatgtgg ccatcgaaca
1141 ccggaatgag gctgatctga gcctcgtatt gtcccactgc acgggagcca cagatggggc
1201 cacagctgac aagattcaac gggccagggc acaagcccag aagaagtgag gagtccatcc
1261 tgtacatctc aagcaagggg ttcctcccct agcacctggg cttggcagaa gggccatagt
1321 tcatccagct cctcccctag agcaatgctg aggagcgggg gcatggtagc agggctgtct
1381 ggttttaaat aaagttggaa cacctaaaaa aaaaaaaaaa aa
//