LOCUS BC008987 1156 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens major histocompatibility complex, class II, DR beta 3, mRNA (cDNA clone MGC:17049 IMAGE:4184806), complete cds. ACCESSION BC008987 VERSION BC008987.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1156) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1156) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (30-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 12 Row: l Column: 1 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18641371. FEATURES Location/Qualifiers source 1..1156 /db_xref="H-InvDB:HIT000034127" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17049 IMAGE:4184806" /tissue_type="Brain, glioblastoma with EGFR amplification" /clone_lib="NCI_CGAP_Brn64" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1156 /gene="HLA-DRB3" /db_xref="GeneID:3125" /db_xref="HGNC:HGNC:4951" CDS 25..825 /gene="HLA-DRB3" /codon_start=1 /product="major histocompatibility complex, class II, DR beta 3" /protein_id="AAH08987.1" /db_xref="GeneID:3125" /db_xref="HGNC:HGNC:4951" /translation="MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSEC HFFNGTERVRYLDRYFHNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRG RVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRW FRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWR ARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS" BASE COUNT 257 a 304 c 329 g 266 t ORIGIN 1 cctggtcctg tcctcttctc cagcatggtg tgtctgaagc tccctggagg ctccagcttg 61 gcagcgttga cagtgacact gatggtgctg agctcccgac tggctttcgc tggggacacc 121 cgaccacgtt tcttggagct gcgtaagtct gagtgtcatt tcttcaatgg gacggagcgg 181 gtgcggtacc tggacagata cttccataac caggaggagt tcctgcgctt cgacagcgac 241 gtgggggagt accgggcggt gacggagctg gggcggcctg tcgccgagtc ctggaacagc 301 cagaaggacc tcctggagca gaagcggggc cgggtggaca attactgcag acacaactac 361 ggggttggtg agagcttcac agtgcagcgg cgagtccatc ctcaggtgac tgtgtatcct 421 gcaaagaccc agcccctgca gcaccacaac ctcctggtct gctctgtgag tggtttctat 481 ccaggcagca ttgaagtcag gtggttccgg aacggccagg aagagaaggc tggggtggtg 541 tccacgggcc tgatccagaa tggagactgg accttccaga ccctggtgat gctagaaaca 601 gttcctcgga gtggagaggt ttacacttgc caagtggagc acccaagcgt aacgagcgct 661 ctcacagtgg aatggagagc acggtctgaa tctgcacaga gcaagatgct gagtggagtc 721 gggggctttg tgctgggcct gctcttcctt ggggccgggc tgttcatcta cttcaggaat 781 cagaaaggac actctggact tcagccaaca ggattcctga gctgaagtgc agatgacaat 841 ttaaggaaga atcttctgcc ccagctttgc aggatgaaaa gctttcccgc ctggctgtta 901 ttcttccacg agagagggct ttctcaggac ctagttgcta ctggttcagc aactgcagaa 961 aatgtcctcc cttgtggctt cctcagttcc tgcccttggc ctgaagtccc agcattgatg 1021 gcagcgcctc atcttcaact tttgtgctcc cctttgccta aaccctatgg cctcctgtgc 1081 atctgtactc accctgtacc acaaacacat tacattatta aatgtttctc aaagatggaa 1141 aaaaaaaaaa aaaaaa //