LOCUS BC008987 1156 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens major histocompatibility complex, class II, DR beta 3,
mRNA (cDNA clone MGC:17049 IMAGE:4184806), complete cds.
ACCESSION BC008987
VERSION BC008987.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1156)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1156)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: l Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18641371.
FEATURES Location/Qualifiers
source 1..1156
/db_xref="H-InvDB:HIT000034127"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17049 IMAGE:4184806"
/tissue_type="Brain, glioblastoma with EGFR amplification"
/clone_lib="NCI_CGAP_Brn64"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1156
/gene="HLA-DRB3"
/db_xref="GeneID:3125"
/db_xref="HGNC:HGNC:4951"
CDS 25..825
/gene="HLA-DRB3"
/codon_start=1
/product="major histocompatibility complex, class II, DR
beta 3"
/protein_id="AAH08987.1"
/db_xref="GeneID:3125"
/db_xref="HGNC:HGNC:4951"
/translation="MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSEC
HFFNGTERVRYLDRYFHNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRG
RVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRW
FRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWR
ARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS"
BASE COUNT 257 a 304 c 329 g 266 t
ORIGIN
1 cctggtcctg tcctcttctc cagcatggtg tgtctgaagc tccctggagg ctccagcttg
61 gcagcgttga cagtgacact gatggtgctg agctcccgac tggctttcgc tggggacacc
121 cgaccacgtt tcttggagct gcgtaagtct gagtgtcatt tcttcaatgg gacggagcgg
181 gtgcggtacc tggacagata cttccataac caggaggagt tcctgcgctt cgacagcgac
241 gtgggggagt accgggcggt gacggagctg gggcggcctg tcgccgagtc ctggaacagc
301 cagaaggacc tcctggagca gaagcggggc cgggtggaca attactgcag acacaactac
361 ggggttggtg agagcttcac agtgcagcgg cgagtccatc ctcaggtgac tgtgtatcct
421 gcaaagaccc agcccctgca gcaccacaac ctcctggtct gctctgtgag tggtttctat
481 ccaggcagca ttgaagtcag gtggttccgg aacggccagg aagagaaggc tggggtggtg
541 tccacgggcc tgatccagaa tggagactgg accttccaga ccctggtgat gctagaaaca
601 gttcctcgga gtggagaggt ttacacttgc caagtggagc acccaagcgt aacgagcgct
661 ctcacagtgg aatggagagc acggtctgaa tctgcacaga gcaagatgct gagtggagtc
721 gggggctttg tgctgggcct gctcttcctt ggggccgggc tgttcatcta cttcaggaat
781 cagaaaggac actctggact tcagccaaca ggattcctga gctgaagtgc agatgacaat
841 ttaaggaaga atcttctgcc ccagctttgc aggatgaaaa gctttcccgc ctggctgtta
901 ttcttccacg agagagggct ttctcaggac ctagttgcta ctggttcagc aactgcagaa
961 aatgtcctcc cttgtggctt cctcagttcc tgcccttggc ctgaagtccc agcattgatg
1021 gcagcgcctc atcttcaact tttgtgctcc cctttgccta aaccctatgg cctcctgtgc
1081 atctgtactc accctgtacc acaaacacat tacattatta aatgtttctc aaagatggaa
1141 aaaaaaaaaa aaaaaa
//