LOCUS BC008955 1728 bp mRNA linear HUM 04-NOV-2003 DEFINITION Homo sapiens ubiquitin C, mRNA (cDNA clone IMAGE:3030313), partial cds. ACCESSION BC008955 VERSION BC008955.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1728) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1728) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (29-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Oct 31, 2003 this sequence version replaced BC008955.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 10 Row: b Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 20149305. FEATURES Location/Qualifiers source 1..1728 /db_xref="H-InvDB:HIT000034104" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3030313" /tissue_type="Ovary, adenocarcinoma" /clone_lib="NIH_MGC_9" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..1728 /gene="UBC" /gene_synonym="HMG20" /db_xref="GeneID:7316" /db_xref="MIM:191340" CDS <1..1643 /gene="UBC" /gene_synonym="HMG20" /codon_start=3 /product="UBC protein" /protein_id="AAH08955.2" /db_xref="GeneID:7316" /db_xref="MIM:191340" /translation="QFLFVDCCDRHLTMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG RTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV" misc_feature 42..263 /gene="UBC" /gene_synonym="HMG20" /note="ubiquitin; Region: Ubiquitin family. This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1" /db_xref="CDD:pfam00240" misc_feature 270..491 /gene="UBC" /gene_synonym="HMG20" /note="ubiquitin; Region: Ubiquitin family. This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1" /db_xref="CDD:pfam00240" misc_feature 498..719 /gene="UBC" /gene_synonym="HMG20" /note="ubiquitin; Region: Ubiquitin family. This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1" /db_xref="CDD:pfam00240" misc_feature 726..947 /gene="UBC" /gene_synonym="HMG20" /note="ubiquitin; Region: Ubiquitin family. This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1" /db_xref="CDD:pfam00240" misc_feature 954..1175 /gene="UBC" /gene_synonym="HMG20" /note="ubiquitin; Region: Ubiquitin family. This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1" /db_xref="CDD:pfam00240" misc_feature 1182..1403 /gene="UBC" /gene_synonym="HMG20" /note="ubiquitin; Region: Ubiquitin family. This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1" /db_xref="CDD:pfam00240" misc_feature 1410..1631 /gene="UBC" /gene_synonym="HMG20" /note="ubiquitin; Region: Ubiquitin family. This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1" /db_xref="CDD:pfam00240" BASE COUNT 489 a 451 c 438 g 350 t ORIGIN 1 cgcagttctt gtttgtggat tgctgtgatc gtcacttgac aatgcagatc ttcgtgaaga 61 ctctgactgg taagaccatc accctcgagg ttgagcccag tgacaccatc gagaatgtca 121 aggcaaagat ccaagataag gaaggcatcc ctcctgacca gcagaggctg atctttgctg 181 gaaaacagct ggaagatggg cgcaccctgt ctgactacaa catccagaaa gagtccaccc 241 tgcacctggt gctccgtctc agaggtggga tgcaaatctt cgtgaagaca ctcactggca 301 agaccatcac ccttgaggtc gagcccagtg acaccatcga gaacgtcaaa gcaaagatcc 361 aggacaagga aggcattcct cctgaccagc agaggttgat ctttgccgga aagcagctgg 421 aagatgggcg caccctgtct gactacaaca tccagaaaga gtctaccctg cacctggtgc 481 tccgtctcag aggtgggatg cagatcttcg tgaagaccct gactggtaag accatcaccc 541 tcgaggtgga gcccagtgac accatcgaga atgtcaaggc aaagatccaa gataaggaag 601 gcattcctcc tgatcagcag aggttgatct ttgccggaaa acagctggaa gatggtcgta 661 ccctgtctga ctacaacatc cagaaagagt ccaccttgca cctggtactc cgtctcagag 721 gtgggatgca aatcttcgtg aagacactca ctggcaagac catcaccctt gaggtcgagc 781 ccagtgacac tatcgagaac gtcaaagcaa agatccaaga caaggaaggc attcctcctg 841 accagcagag gttgatcttt gccggaaagc agctggaaga tgggcgcacc ctgtctgact 901 acaacatcca gaaagagtct accctgcacc tggtgctccg tctcagaggt gggatgcaga 961 tcttcgtgaa gaccctgact ggtaagacca tcactctcga agtggagccg agtgacacca 1021 ttgagaatgt caaggcaaag atccaagaca aggaaggcat ccctcctgac cagcagaggt 1081 tgatctttgc cggaaaacag ctggaagatg gtcgtaccct gtctgactac aacatccaga 1141 aagagtccac cctgcacctg gtgctccgtc tcagaggtgg gatgcagatc ttcgtgaaga 1201 ccctgactgg taagaccatc actctcgaag tggagccgag tgacaccatt gagaatgtca 1261 aggcaaagat ccaagacaag gaaggcatcc ctcctgacca gcagaggttg atctttgctg 1321 ggaaacagct ggaagatgga cgcaccctgt ctgactacaa catccagaaa gagtccaccc 1381 tgcacctggt gctccgtctc agaggtggga tgcaaatctt cgtgaagacc ctgactggta 1441 agaccatcac cctcgaggtg gagcccagtg acaccatcga gaatgtcaag gcaaagatcc 1501 aagataagga aggcatccct cctgatcagc agaggttgat ctttgctggg aaacagctgg 1561 aagatggacg caccctgtct gactacaaca tccagaaaga gtccactctg cacttggtcc 1621 tgcgcttgag ggggggtgtc taagtttccc cttttaaggt ttcaacaaat ttcattgcac 1681 tttcctttca ataaagttgt tgcattccca aaaaaaaaaa aaaaaaaa //