LOCUS BC008955 1728 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens ubiquitin C, mRNA (cDNA clone IMAGE:3030313), partial
cds.
ACCESSION BC008955
VERSION BC008955.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1728)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1728)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 31, 2003 this sequence version replaced BC008955.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 10 Row: b Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20149305.
FEATURES Location/Qualifiers
source 1..1728
/db_xref="H-InvDB:HIT000034104"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3030313"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1728
/gene="UBC"
/gene_synonym="HMG20"
/db_xref="GeneID:7316"
/db_xref="MIM:191340"
CDS <1..1643
/gene="UBC"
/gene_synonym="HMG20"
/codon_start=3
/product="UBC protein"
/protein_id="AAH08955.2"
/db_xref="GeneID:7316"
/db_xref="MIM:191340"
/translation="QFLFVDCCDRHLTMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ
DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI
TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
RTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG
IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV
EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS
DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV"
misc_feature 42..263
/gene="UBC"
/gene_synonym="HMG20"
/note="ubiquitin; Region: Ubiquitin family. This family
contains a number of ubiquitin-like proteins: SUMO (smt3
homologue), Nedd8, Elongin B, Rub1"
/db_xref="CDD:pfam00240"
misc_feature 270..491
/gene="UBC"
/gene_synonym="HMG20"
/note="ubiquitin; Region: Ubiquitin family. This family
contains a number of ubiquitin-like proteins: SUMO (smt3
homologue), Nedd8, Elongin B, Rub1"
/db_xref="CDD:pfam00240"
misc_feature 498..719
/gene="UBC"
/gene_synonym="HMG20"
/note="ubiquitin; Region: Ubiquitin family. This family
contains a number of ubiquitin-like proteins: SUMO (smt3
homologue), Nedd8, Elongin B, Rub1"
/db_xref="CDD:pfam00240"
misc_feature 726..947
/gene="UBC"
/gene_synonym="HMG20"
/note="ubiquitin; Region: Ubiquitin family. This family
contains a number of ubiquitin-like proteins: SUMO (smt3
homologue), Nedd8, Elongin B, Rub1"
/db_xref="CDD:pfam00240"
misc_feature 954..1175
/gene="UBC"
/gene_synonym="HMG20"
/note="ubiquitin; Region: Ubiquitin family. This family
contains a number of ubiquitin-like proteins: SUMO (smt3
homologue), Nedd8, Elongin B, Rub1"
/db_xref="CDD:pfam00240"
misc_feature 1182..1403
/gene="UBC"
/gene_synonym="HMG20"
/note="ubiquitin; Region: Ubiquitin family. This family
contains a number of ubiquitin-like proteins: SUMO (smt3
homologue), Nedd8, Elongin B, Rub1"
/db_xref="CDD:pfam00240"
misc_feature 1410..1631
/gene="UBC"
/gene_synonym="HMG20"
/note="ubiquitin; Region: Ubiquitin family. This family
contains a number of ubiquitin-like proteins: SUMO (smt3
homologue), Nedd8, Elongin B, Rub1"
/db_xref="CDD:pfam00240"
BASE COUNT 489 a 451 c 438 g 350 t
ORIGIN
1 cgcagttctt gtttgtggat tgctgtgatc gtcacttgac aatgcagatc ttcgtgaaga
61 ctctgactgg taagaccatc accctcgagg ttgagcccag tgacaccatc gagaatgtca
121 aggcaaagat ccaagataag gaaggcatcc ctcctgacca gcagaggctg atctttgctg
181 gaaaacagct ggaagatggg cgcaccctgt ctgactacaa catccagaaa gagtccaccc
241 tgcacctggt gctccgtctc agaggtggga tgcaaatctt cgtgaagaca ctcactggca
301 agaccatcac ccttgaggtc gagcccagtg acaccatcga gaacgtcaaa gcaaagatcc
361 aggacaagga aggcattcct cctgaccagc agaggttgat ctttgccgga aagcagctgg
421 aagatgggcg caccctgtct gactacaaca tccagaaaga gtctaccctg cacctggtgc
481 tccgtctcag aggtgggatg cagatcttcg tgaagaccct gactggtaag accatcaccc
541 tcgaggtgga gcccagtgac accatcgaga atgtcaaggc aaagatccaa gataaggaag
601 gcattcctcc tgatcagcag aggttgatct ttgccggaaa acagctggaa gatggtcgta
661 ccctgtctga ctacaacatc cagaaagagt ccaccttgca cctggtactc cgtctcagag
721 gtgggatgca aatcttcgtg aagacactca ctggcaagac catcaccctt gaggtcgagc
781 ccagtgacac tatcgagaac gtcaaagcaa agatccaaga caaggaaggc attcctcctg
841 accagcagag gttgatcttt gccggaaagc agctggaaga tgggcgcacc ctgtctgact
901 acaacatcca gaaagagtct accctgcacc tggtgctccg tctcagaggt gggatgcaga
961 tcttcgtgaa gaccctgact ggtaagacca tcactctcga agtggagccg agtgacacca
1021 ttgagaatgt caaggcaaag atccaagaca aggaaggcat ccctcctgac cagcagaggt
1081 tgatctttgc cggaaaacag ctggaagatg gtcgtaccct gtctgactac aacatccaga
1141 aagagtccac cctgcacctg gtgctccgtc tcagaggtgg gatgcagatc ttcgtgaaga
1201 ccctgactgg taagaccatc actctcgaag tggagccgag tgacaccatt gagaatgtca
1261 aggcaaagat ccaagacaag gaaggcatcc ctcctgacca gcagaggttg atctttgctg
1321 ggaaacagct ggaagatgga cgcaccctgt ctgactacaa catccagaaa gagtccaccc
1381 tgcacctggt gctccgtctc agaggtggga tgcaaatctt cgtgaagacc ctgactggta
1441 agaccatcac cctcgaggtg gagcccagtg acaccatcga gaatgtcaag gcaaagatcc
1501 aagataagga aggcatccct cctgatcagc agaggttgat ctttgctggg aaacagctgg
1561 aagatggacg caccctgtct gactacaaca tccagaaaga gtccactctg cacttggtcc
1621 tgcgcttgag ggggggtgtc taagtttccc cttttaaggt ttcaacaaat ttcattgcac
1681 tttcctttca ataaagttgt tgcattccca aaaaaaaaaa aaaaaaaa
//