LOCUS BC008874 1369 bp mRNA linear HUM 11-SEP-2007 DEFINITION Homo sapiens SIX homeobox 1, mRNA (cDNA clone MGC:15242 IMAGE:4138234), complete cds. ACCESSION BC008874 VERSION BC008874.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1369) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1369) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC008874.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 26 Row: m Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 5174680. FEATURES Location/Qualifiers source 1..1369 /db_xref="H-InvDB:HIT000034041" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:15242 IMAGE:4138234" /tissue_type="Muscle, rhabdomyosarcoma" /clone_lib="NIH_MGC_17" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1369 /gene="SIX1" /gene_synonym="BOS3" /gene_synonym="DFNA23" /gene_synonym="TIP39" /db_xref="GeneID:6495" /db_xref="HGNC:HGNC:10887" /db_xref="MIM:601205" CDS 249..1103 /gene="SIX1" /gene_synonym="BOS3" /gene_synonym="DFNA23" /gene_synonym="TIP39" /codon_start=1 /product="SIX homeobox 1" /protein_id="AAH08874.1" /db_xref="GeneID:6495" /db_xref="HGNC:HGNC:10887" /db_xref="MIM:601205" /translation="MSMLPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLH KNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLCGRP LGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEA TGLTTTQVSNWFKNRRQRDRAAEAKERENTENNNSSSNKQNQLSPLEGGKPLMSSSEE EFSPPQSPDQNSVLLLQGNMGHARSSNYSLPGLTASQPSHGLQTHQHQLQDSLLGPLT SSLVDLGS" BASE COUNT 309 a 438 c 368 g 254 t ORIGIN 1 cggaggcagc aaggccttaa aggctactga gtgcgccggc cgttccgtgt ccagaacctc 61 ccctactcct ccgccttctc ttccttggcc gcccaccgcc aagttccgac tccggttttc 121 gcctttgcaa agcctaagga ggaggttagg aacagccgcg cccccctccc tgcggccgcc 181 gccccctgcc tctcggctct gctccctgcc gcgtgcgcct gggccgtgcg ccccggcagg 241 ccccagccat gtcgatgctg ccgtcgtttg gctttacgca ggagcaagtg gcgtgcgtgt 301 gcgaggttct gcagcaaggc ggaaacctgg agcgcctggg caggttcctg tggtcactgc 361 ccgcctgcga ccacctgcac aagaacgaga gcgtactcaa ggccaaggcg gtggtcgcct 421 tccaccgcgg caacttccgt gagctctaca agatcctgga gagccaccag ttctcgcctc 481 acaaccaccc caaactgcag caactgtggc tgaaggcgca ttacgtggag gccgagaagc 541 tgtgcggccg acccctgggc gccgtgggca aatatcgggt gcgccgaaaa tttccactgc 601 cgcgcaccat ctgggacggc gaggagacca gctactgctt caaggagaag tcgaggggtg 661 tcctgcggga gtggtacgcg cacaatccct acccatcgcc gcgtgagaag cgggagctgg 721 ccgaggccac cggcctcacc accacccagg tcagcaactg gtttaagaac cggaggcaaa 781 gagaccgggc cgcggaggcc aaggaaaggg agaacaccga aaacaataac tcctcctcca 841 acaagcagaa ccaactctct cctctggaag ggggcaagcc gctcatgtcc agctcagaag 901 aggaattctc acctccccaa agtccagacc agaactcggt ccttctgctg cagggcaata 961 tgggccacgc caggagctca aactattctc tcccgggctt aacagcctcg cagcccagtc 1021 acggcctgca gacccaccag catcagctcc aagactctct gctcggcccc ctcacctcca 1081 gtctggtgga cttggggtcc taagtgggga gggactgggg cctcgaaggg atttctggag 1141 cagcaaccac tgcagcgact agggacactt gtaaatagaa atcaggaaca tttttgcagc 1201 ttgtttctgg agttgtttgc gcataaagga atggtggact ttcacaaata tctttttaaa 1261 aatcaaaacc aacagcgatc tcaagcttaa tctcctcttc tctccaactc tttccacttt 1321 tgcattttcc ttcccaatgc agagatcagg gaaaaaaaaa aaaaaaaaa //