LOCUS BC008874 1369 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens SIX homeobox 1, mRNA (cDNA clone MGC:15242
IMAGE:4138234), complete cds.
ACCESSION BC008874
VERSION BC008874.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1369)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1369)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008874.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: m Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5174680.
FEATURES Location/Qualifiers
source 1..1369
/db_xref="H-InvDB:HIT000034041"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15242 IMAGE:4138234"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1369
/gene="SIX1"
/gene_synonym="BOS3"
/gene_synonym="DFNA23"
/gene_synonym="TIP39"
/db_xref="GeneID:6495"
/db_xref="HGNC:HGNC:10887"
/db_xref="MIM:601205"
CDS 249..1103
/gene="SIX1"
/gene_synonym="BOS3"
/gene_synonym="DFNA23"
/gene_synonym="TIP39"
/codon_start=1
/product="SIX homeobox 1"
/protein_id="AAH08874.1"
/db_xref="GeneID:6495"
/db_xref="HGNC:HGNC:10887"
/db_xref="MIM:601205"
/translation="MSMLPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLH
KNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLCGRP
LGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEA
TGLTTTQVSNWFKNRRQRDRAAEAKERENTENNNSSSNKQNQLSPLEGGKPLMSSSEE
EFSPPQSPDQNSVLLLQGNMGHARSSNYSLPGLTASQPSHGLQTHQHQLQDSLLGPLT
SSLVDLGS"
BASE COUNT 309 a 438 c 368 g 254 t
ORIGIN
1 cggaggcagc aaggccttaa aggctactga gtgcgccggc cgttccgtgt ccagaacctc
61 ccctactcct ccgccttctc ttccttggcc gcccaccgcc aagttccgac tccggttttc
121 gcctttgcaa agcctaagga ggaggttagg aacagccgcg cccccctccc tgcggccgcc
181 gccccctgcc tctcggctct gctccctgcc gcgtgcgcct gggccgtgcg ccccggcagg
241 ccccagccat gtcgatgctg ccgtcgtttg gctttacgca ggagcaagtg gcgtgcgtgt
301 gcgaggttct gcagcaaggc ggaaacctgg agcgcctggg caggttcctg tggtcactgc
361 ccgcctgcga ccacctgcac aagaacgaga gcgtactcaa ggccaaggcg gtggtcgcct
421 tccaccgcgg caacttccgt gagctctaca agatcctgga gagccaccag ttctcgcctc
481 acaaccaccc caaactgcag caactgtggc tgaaggcgca ttacgtggag gccgagaagc
541 tgtgcggccg acccctgggc gccgtgggca aatatcgggt gcgccgaaaa tttccactgc
601 cgcgcaccat ctgggacggc gaggagacca gctactgctt caaggagaag tcgaggggtg
661 tcctgcggga gtggtacgcg cacaatccct acccatcgcc gcgtgagaag cgggagctgg
721 ccgaggccac cggcctcacc accacccagg tcagcaactg gtttaagaac cggaggcaaa
781 gagaccgggc cgcggaggcc aaggaaaggg agaacaccga aaacaataac tcctcctcca
841 acaagcagaa ccaactctct cctctggaag ggggcaagcc gctcatgtcc agctcagaag
901 aggaattctc acctccccaa agtccagacc agaactcggt ccttctgctg cagggcaata
961 tgggccacgc caggagctca aactattctc tcccgggctt aacagcctcg cagcccagtc
1021 acggcctgca gacccaccag catcagctcc aagactctct gctcggcccc ctcacctcca
1081 gtctggtgga cttggggtcc taagtgggga gggactgggg cctcgaaggg atttctggag
1141 cagcaaccac tgcagcgact agggacactt gtaaatagaa atcaggaaca tttttgcagc
1201 ttgtttctgg agttgtttgc gcataaagga atggtggact ttcacaaata tctttttaaa
1261 aatcaaaacc aacagcgatc tcaagcttaa tctcctcttc tctccaactc tttccacttt
1321 tgcattttcc ttcccaatgc agagatcagg gaaaaaaaaa aaaaaaaaa
//