LOCUS BC007779 1410 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:12745 IMAGE:4301394), complete cds. ACCESSION BC007779 VERSION BC007779.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1410) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1410) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC007779.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 17 Row: n Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 51599152. FEATURES Location/Qualifiers source 1..1410 /db_xref="H-InvDB:HIT000033442" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:12745 IMAGE:4301394" /tissue_type="Uterus, leiomyosarcoma" /clone_lib="NIH_MGC_46" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1410 /gene="CAPNS1" /gene_synonym="30K" /gene_synonym="CALPAIN4" /gene_synonym="CANP" /gene_synonym="CANPS" /gene_synonym="CDPS" /db_xref="GeneID:826" /db_xref="HGNC:HGNC:1481" /db_xref="MIM:114170" CDS 76..882 /gene="CAPNS1" /gene_synonym="30K" /gene_synonym="CALPAIN4" /gene_synonym="CANP" /gene_synonym="CANPS" /gene_synonym="CDPS" /codon_start=1 /product="calpain, small subunit 1" /protein_id="AAH07779.1" /db_xref="GeneID:826" /db_xref="HGNC:HGNC:1481" /db_xref="MIM:114170" /translation="MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGG GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFR RLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG FEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS" BASE COUNT 304 a 423 c 406 g 277 t ORIGIN 1 ctgcgggagg cccgggagcg gcagtggaac cgactcccag aactccggac gtgtgcggcg 61 cagtgagtcg cagccatgtt cctggttaac tcgttcttga agggcggcgg cggcggcggc 121 gggggaggcg ggggcctggg tgggggcctg ggaaatgtgc ttggaggcct gatcagcggg 181 gccgggggcg gcggcggcgg cggcggcggc ggcggcggtg gtggaggcgg cggtggcggt 241 ggaacggcca tgcgcatcct aggcggagtc atcagcgcca tcagcgaggc ggctgcgcag 301 tacaacccgg agcccccgcc cccacgcaca cattactcca acattgaggc caacgagagt 361 gaggaggtcc ggcagttccg gagactcttt gcccagctgg ctggagatga catggaggtc 421 agcgccacag aactcatgaa cattctcaat aaggttgtga cacgacaccc tgatctgaag 481 actgatggtt ttggcattga cacatgtcgc agcatggtgg ccgtgatgga tagcgacacc 541 acaggcaagc tgggctttga ggaattcaag tacttgtgga acaacatcaa aaggtggcag 601 gccatataca aacagttcga cactgaccga tcagggacca tttgcagtag tgaactccca 661 ggtgcctttg aggcagcagg gttccacctg aatgagcatc tctataacat gatcatccga 721 cgctactcag atgaaagtgg gaacatggat tttgacaact tcatcagctg cttggtcagg 781 ctggacgcca tgttccgtgc cttcaaatct cttgacaaag atggcactgg acaaatccag 841 gtgaacatcc aggagtggct gcagctgact atgtattcct gaactggagc cccagacccg 901 ccccctcacc gccttgctat aggagtcacc tggagcctcg gtctctccca gggccgatcc 961 tgtctgcagt cacatctttg tggggcctgc tgacccacaa gcttttgttc tctcagtact 1021 tgttacccag cttctcaaca tccagggccc aatttgccct gcctggagtt ccccctggct 1081 ctaggacact ctaacaagct ctgtccacgg gtctccccat tcccaccagg ccctgcacac 1141 acccactccg taacctctcc cctgtacctg tgccaagcct agcacttgtg atgcctccat 1201 gccccgaggg ccctctctca gttctgggag gatgactcca gtccctgcac gccctggcac 1261 acccttcacg gttgctaccc aggcggccaa gctccagacc gtgccagacc caggtgcccc 1321 agtgcctttg tctatattct gctcccagcc tgccaggccc aggaggaaat aaacatgccc 1381 cagttgctga aaaaaaaaaa aaaaaaaaaa //