LOCUS BC007779 1410 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:12745
IMAGE:4301394), complete cds.
ACCESSION BC007779
VERSION BC007779.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1410)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1410)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC007779.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: n Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51599152.
FEATURES Location/Qualifiers
source 1..1410
/db_xref="H-InvDB:HIT000033442"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12745 IMAGE:4301394"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1410
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CALPAIN4"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CDPS"
/db_xref="GeneID:826"
/db_xref="HGNC:HGNC:1481"
/db_xref="MIM:114170"
CDS 76..882
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CALPAIN4"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CDPS"
/codon_start=1
/product="calpain, small subunit 1"
/protein_id="AAH07779.1"
/db_xref="GeneID:826"
/db_xref="HGNC:HGNC:1481"
/db_xref="MIM:114170"
/translation="MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGG
GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFR
RLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG
FEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS
DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS"
BASE COUNT 304 a 423 c 406 g 277 t
ORIGIN
1 ctgcgggagg cccgggagcg gcagtggaac cgactcccag aactccggac gtgtgcggcg
61 cagtgagtcg cagccatgtt cctggttaac tcgttcttga agggcggcgg cggcggcggc
121 gggggaggcg ggggcctggg tgggggcctg ggaaatgtgc ttggaggcct gatcagcggg
181 gccgggggcg gcggcggcgg cggcggcggc ggcggcggtg gtggaggcgg cggtggcggt
241 ggaacggcca tgcgcatcct aggcggagtc atcagcgcca tcagcgaggc ggctgcgcag
301 tacaacccgg agcccccgcc cccacgcaca cattactcca acattgaggc caacgagagt
361 gaggaggtcc ggcagttccg gagactcttt gcccagctgg ctggagatga catggaggtc
421 agcgccacag aactcatgaa cattctcaat aaggttgtga cacgacaccc tgatctgaag
481 actgatggtt ttggcattga cacatgtcgc agcatggtgg ccgtgatgga tagcgacacc
541 acaggcaagc tgggctttga ggaattcaag tacttgtgga acaacatcaa aaggtggcag
601 gccatataca aacagttcga cactgaccga tcagggacca tttgcagtag tgaactccca
661 ggtgcctttg aggcagcagg gttccacctg aatgagcatc tctataacat gatcatccga
721 cgctactcag atgaaagtgg gaacatggat tttgacaact tcatcagctg cttggtcagg
781 ctggacgcca tgttccgtgc cttcaaatct cttgacaaag atggcactgg acaaatccag
841 gtgaacatcc aggagtggct gcagctgact atgtattcct gaactggagc cccagacccg
901 ccccctcacc gccttgctat aggagtcacc tggagcctcg gtctctccca gggccgatcc
961 tgtctgcagt cacatctttg tggggcctgc tgacccacaa gcttttgttc tctcagtact
1021 tgttacccag cttctcaaca tccagggccc aatttgccct gcctggagtt ccccctggct
1081 ctaggacact ctaacaagct ctgtccacgg gtctccccat tcccaccagg ccctgcacac
1141 acccactccg taacctctcc cctgtacctg tgccaagcct agcacttgtg atgcctccat
1201 gccccgaggg ccctctctca gttctgggag gatgactcca gtccctgcac gccctggcac
1261 acccttcacg gttgctaccc aggcggccaa gctccagacc gtgccagacc caggtgcccc
1321 agtgcctttg tctatattct gctcccagcc tgccaggccc aggaggaaat aaacatgccc
1381 cagttgctga aaaaaaaaaa aaaaaaaaaa
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