LOCUS       BC005880                3413 bp    mRNA    linear   HUM 18-MAR-2009
DEFINITION  Homo sapiens HMG box domain containing 3, mRNA (cDNA clone
            IMAGE:3529534), partial cds.
ACCESSION   BC005880
VERSION     BC005880.2
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3413)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 3413)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (02-APR-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     On Nov 6, 2003 this sequence version replaced BC005880.1.
            Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Institute for Systems Biology
            http://www.systemsbiology.org
            contact: amadan@systemsbiology.org
            Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
            Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 11 Row: k Column: 15
            This clone was selected for full length sequencing because it
            passed the following selection criteria: Hexamer frequency ORF
            analysis.
FEATURES             Location/Qualifiers
     source          1..3413
                     /db_xref="H-InvDB:HIT000086549"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:3529534"
                     /tissue_type="Muscle, rhabdomyosarcoma"
                     /clone_lib="NIH_MGC_17"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
     gene            <1..3413
                     /gene="HMGXB3"
                     /gene_synonym="SMF"
                     /db_xref="GeneID:22993"
                     /db_xref="HGNC:HGNC:28982"
     CDS             <1..2459
                     /gene="HMGXB3"
                     /gene_synonym="SMF"
                     /codon_start=3
                     /product="HMGXB3 protein"
                     /protein_id="AAH05880.2"
                     /db_xref="GeneID:22993"
                     /db_xref="HGNC:HGNC:28982"
                     /translation="TSSPLPAPKKPTGVDLLTPGSRAPELKGRARGKPSLLAAARPMR
                     AILPAPVNVGRGSSMGLPRARQAFSLSDKTPSVRTCGLKPSTLKQLGQPIQQPSGPGE
                     VKLPSGPSNRTSQVKVVEVKPDMFPPYKYSCTVTLDLGLATSRGRGKCKNPSCSYVYT
                     NRHKPRICPSCGVNLAKDRTEKTTKAIEVSSPLPDVLNATEPLSTAQREIQRQSTLQL
                     LRKVLQIPENESELAEVFALIHELNSSRLILSNVSEETVTIEQTSWSNYYESPSTQCL
                     LCSSPLFKGGQNSLAGPQECWLLTASRLQTVTAQVKMCLNPHCLALHSFIDIYTGLFN
                     VGNKLLVSLDLLFAIRNQIKLGEDPRVSINVVLKSVQEQTEKTLTSEELSQLQELLCN
                     GYWAFECLTVRDYNDMICGICGVAPKVEMAQRSEQNVLALKSVEFTWPEFLGSNEVNV
                     EDFWATMETEVIEQVAFPASIPITKFDASVIAPFFPPLMRGAVVVNTEKDKNLDVQPV
                     PGSGSALVRLLQEGTCKLDEIGSYSEEKLQHLLRQCGIPFGAEDSKDQLCFSLLALYE
                     SVQNGARAIRPPRHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPVY
                     VVDMATSVALCADLCYPELTNQMWGRNQGCFSSPTEPPVSVSCPELLDQHYTVDMTET
                     EHSIQHPVTKTATRRIVHAGLQPNPGDPSAGHHSLALCPELAPYATILASIVDSKPNG
                     VRQRPIAFDNATHYYLYNRLMDFLTSREIVNRQIHDIVQSCQPGEVVIRDTLYRLGVA
                     QIKTETEEEGEEEEVAAVAE"
BASE COUNT          784 a          935 c          942 g          752 t
ORIGIN      
        1 gtacctccag tccactccct gctcctaaaa aacctacagg agttgacctg cttacccctg
       61 ggtccagagc tccagagctt aaaggcagag cacggggcaa gccctcatta ctggctgcag
      121 caagacccat gagagcaatt ttgccagccc cagttaacgt ggggcgaggc agcagcatgg
      181 gactgcccag ggccaggcag gccttttccc tgagtgataa gactccctct gtgaggactt
      241 gtggtctgaa gccaagcaca ctgaagcagc tgggccagcc cattcaacag ccatctggcc
      301 ctggtgaggt gaagctacca agtggcccat ccaacaggac ttctcaggtg aaagttgtgg
      361 aggtcaagcc cgatatgttt cctccatata agtacagctg cactgtcaca ttggatttgg
      421 gcctggctac atcaagaggc cggggaaagt gcaagaatcc ctcttgtagc tatgtctaca
      481 ccaacaggca caaacctcga atttgtccca gctgtggtgt taaccttgcc aaagaccgga
      541 ctgagaaaac caccaaggct atcgaggtga gctcaccact cccagatgta ctgaatgcca
      601 cagagcccct gagcacagcc cagagggaga tccagcgcca gtccacactg cagctgctgc
      661 gcaaagtcct gcagattcct gagaatgagt cagagctggc tgaggtcttc gccttgattc
      721 atgaactcaa cagctctcga cttatcttgt ccaacgtgag tgaggagaca gtcaccatcg
      781 agcaaacctc ttggtcgaat tattatgagt ctccgtccac gcagtgcctt ctctgtagca
      841 gcccattatt caaaggggga caaaactccc tggctgggcc ccaggagtgc tggctgctga
      901 cagccagccg tctgcagaca gtgactgccc aggtgaagat gtgtctgaac ccccattgtc
      961 tggccctgca cagcttcata gacatctaca caggtctctt taatgtgggg aacaagctgc
     1021 tggtaagcct ggacttgctt tttgcaatca gaaatcagat caagctcgga gaggacccca
     1081 gagtgtccat caatgttgtt ctgaagtcgg tgcaggagca gacagagaag actctgacct
     1141 cggaggagct gagccagctg caggagctgc tgtgcaatgg ctattgggcc tttgagtgcc
     1201 tcactgtccg agactacaat gacatgatct gtggcatctg tggtgtggcc cccaaagtgg
     1261 aaatggctca gaggagtgaa cagaatgtgc tagcactgaa gagcgtggag ttcacctggc
     1321 ctgaattcct gggctctaat gaggtaaatg tggaggactt ttgggccacg atggagacag
     1381 aggtgattga gcaggtggca tttcctgcca gcatccctat caccaaattt gatgcgtctg
     1441 ttattgcccc cttcttccca ccactcatga gaggagctgt ggtcgtcaac actgagaaag
     1501 acaaaaacct ggatgtgcag ccagtacctg gcagtggcag tgccttggtg aggctgctcc
     1561 aggagggcac ctgcaagctt gatgagattg gctcctacag tgaagagaag ctgcagcacc
     1621 tgctaaggca gtgtggaatc ccctttgggg cagaagactc caaggaccag ctctgcttct
     1681 ccttgttggc cctctacgaa tctgtacaga atggagctag agctatacgg cccccacgtc
     1741 acttcacagg tggtaaaatc tacaaggtgt gcccccatca ggtggtctgc ggctccaagt
     1801 atcttgtgcg aggtgagagt gcccgtgacc atgtggacct gcttgcctct tcccgccact
     1861 ggccgcctgt ctatgtggta gatatggcca cgtcagtggc cctgtgtgct gacctctgct
     1921 acccagagct gactaaccag atgtggggga ggaaccaggg ctgtttctct agccccacag
     1981 agccacctgt gagtgtgtcc tgcccagagc tcttggacca gcattatact gtggacatga
     2041 cagaaactga gcactctatc cagcacccag tcaccaagac tgccacgcgg cgcatcgtcc
     2101 atgcaggcct acagcccaat cctggtgacc ccagtgctgg gcaccactcc ttggccctgt
     2161 gccctgaatt ggcaccttac gcaaccatcc tggcctccat cgtggacagc aaaccaaacg
     2221 gtgtccgcca gcggcccatt gccttcgaca atgccactca ctattacctc tacaaccgcc
     2281 tcatggactt cctcaccagc cgcgaaattg tcaatcgtca gatccatgac attgtacaga
     2341 gctgccagcc tggtgaggtg gtcattcgtg acaccctcta ccgccttggg gttgctcaga
     2401 tcaagacaga gacagaggag gagggtgagg aagaggaggt ggccgcagtg gcagaataag
     2461 ccaggctgtt gtacagggac tacaccatct ctcaagccat agtaaggccc ttgcctgagg
     2521 cagagctatc caggggacct gcagaagtgg tctcctgtgg ggagggcctc tgactgctgg
     2581 gactgaccaa agagcttcca ttccctgagc atggtgggac ccagggtcct cagttctcaa
     2641 ccctccaggg gtcaggagtg gtaccaggaa acctcttctg gccccgagag agcacttggg
     2701 ggacacggta tgtttaatgg aggggaggct gagggaaagg ctggtagctg gtgggttccg
     2761 tggggcctgc tgtgtgggtc agggtggagg tcctgggtgg gctaaggcgt gagccccagc
     2821 actaggtggg aaggctgctg aggtctctcc cacccctgag gagccctggt ttcagccccc
     2881 tcagtctgat gaattgctta gcctgttgcc tttgactagg ggcctgggtg gcctcattaa
     2941 ctctaggggt ccctttgggc tcttgattct ccctgaagga gggatgcatt tctctcttgc
     3001 tcttcctgta cccacatttg ggggaagctg aggagggagg aacagtcagc cacagctctc
     3061 ttccagcact gtcctctcca ccccaagctt tgaggaagag catccccttc ctcctttccc
     3121 tggccactgc tgctgcagcc aatatcctct ctgggcctgg gaccctctcc acagagggga
     3181 tgtggtccct ggtcatgaca taacctagca gcagtaggaa aaactccctt ctatgaaggg
     3241 gaagcagact gggccataag gaaacagcag gactggctca agtgcccaag gtttgtttag
     3301 ggcctgggaa ttggccatgt gttaatttat tgagtggagt aggtggcttt ttttccctcc
     3361 ctcttccccc aacaagaata aagtttatta aattaaaaaa aaaaaaaaaa aaa
//