LOCUS BC005880 3413 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens HMG box domain containing 3, mRNA (cDNA clone IMAGE:3529534), partial cds. ACCESSION BC005880 VERSION BC005880.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3413) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3413) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Nov 6, 2003 this sequence version replaced BC005880.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 11 Row: k Column: 15 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..3413 /db_xref="H-InvDB:HIT000086549" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3529534" /tissue_type="Muscle, rhabdomyosarcoma" /clone_lib="NIH_MGC_17" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..3413 /gene="HMGXB3" /gene_synonym="SMF" /db_xref="GeneID:22993" /db_xref="HGNC:HGNC:28982" CDS <1..2459 /gene="HMGXB3" /gene_synonym="SMF" /codon_start=3 /product="HMGXB3 protein" /protein_id="AAH05880.2" /db_xref="GeneID:22993" /db_xref="HGNC:HGNC:28982" /translation="TSSPLPAPKKPTGVDLLTPGSRAPELKGRARGKPSLLAAARPMR AILPAPVNVGRGSSMGLPRARQAFSLSDKTPSVRTCGLKPSTLKQLGQPIQQPSGPGE VKLPSGPSNRTSQVKVVEVKPDMFPPYKYSCTVTLDLGLATSRGRGKCKNPSCSYVYT NRHKPRICPSCGVNLAKDRTEKTTKAIEVSSPLPDVLNATEPLSTAQREIQRQSTLQL LRKVLQIPENESELAEVFALIHELNSSRLILSNVSEETVTIEQTSWSNYYESPSTQCL LCSSPLFKGGQNSLAGPQECWLLTASRLQTVTAQVKMCLNPHCLALHSFIDIYTGLFN VGNKLLVSLDLLFAIRNQIKLGEDPRVSINVVLKSVQEQTEKTLTSEELSQLQELLCN GYWAFECLTVRDYNDMICGICGVAPKVEMAQRSEQNVLALKSVEFTWPEFLGSNEVNV EDFWATMETEVIEQVAFPASIPITKFDASVIAPFFPPLMRGAVVVNTEKDKNLDVQPV PGSGSALVRLLQEGTCKLDEIGSYSEEKLQHLLRQCGIPFGAEDSKDQLCFSLLALYE SVQNGARAIRPPRHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPVY VVDMATSVALCADLCYPELTNQMWGRNQGCFSSPTEPPVSVSCPELLDQHYTVDMTET EHSIQHPVTKTATRRIVHAGLQPNPGDPSAGHHSLALCPELAPYATILASIVDSKPNG VRQRPIAFDNATHYYLYNRLMDFLTSREIVNRQIHDIVQSCQPGEVVIRDTLYRLGVA QIKTETEEEGEEEEVAAVAE" BASE COUNT 784 a 935 c 942 g 752 t ORIGIN 1 gtacctccag tccactccct gctcctaaaa aacctacagg agttgacctg cttacccctg 61 ggtccagagc tccagagctt aaaggcagag cacggggcaa gccctcatta ctggctgcag 121 caagacccat gagagcaatt ttgccagccc cagttaacgt ggggcgaggc agcagcatgg 181 gactgcccag ggccaggcag gccttttccc tgagtgataa gactccctct gtgaggactt 241 gtggtctgaa gccaagcaca ctgaagcagc tgggccagcc cattcaacag ccatctggcc 301 ctggtgaggt gaagctacca agtggcccat ccaacaggac ttctcaggtg aaagttgtgg 361 aggtcaagcc cgatatgttt cctccatata agtacagctg cactgtcaca ttggatttgg 421 gcctggctac atcaagaggc cggggaaagt gcaagaatcc ctcttgtagc tatgtctaca 481 ccaacaggca caaacctcga atttgtccca gctgtggtgt taaccttgcc aaagaccgga 541 ctgagaaaac caccaaggct atcgaggtga gctcaccact cccagatgta ctgaatgcca 601 cagagcccct gagcacagcc cagagggaga tccagcgcca gtccacactg cagctgctgc 661 gcaaagtcct gcagattcct gagaatgagt cagagctggc tgaggtcttc gccttgattc 721 atgaactcaa cagctctcga cttatcttgt ccaacgtgag tgaggagaca gtcaccatcg 781 agcaaacctc ttggtcgaat tattatgagt ctccgtccac gcagtgcctt ctctgtagca 841 gcccattatt caaaggggga caaaactccc tggctgggcc ccaggagtgc tggctgctga 901 cagccagccg tctgcagaca gtgactgccc aggtgaagat gtgtctgaac ccccattgtc 961 tggccctgca cagcttcata gacatctaca caggtctctt taatgtgggg aacaagctgc 1021 tggtaagcct ggacttgctt tttgcaatca gaaatcagat caagctcgga gaggacccca 1081 gagtgtccat caatgttgtt ctgaagtcgg tgcaggagca gacagagaag actctgacct 1141 cggaggagct gagccagctg caggagctgc tgtgcaatgg ctattgggcc tttgagtgcc 1201 tcactgtccg agactacaat gacatgatct gtggcatctg tggtgtggcc cccaaagtgg 1261 aaatggctca gaggagtgaa cagaatgtgc tagcactgaa gagcgtggag ttcacctggc 1321 ctgaattcct gggctctaat gaggtaaatg tggaggactt ttgggccacg atggagacag 1381 aggtgattga gcaggtggca tttcctgcca gcatccctat caccaaattt gatgcgtctg 1441 ttattgcccc cttcttccca ccactcatga gaggagctgt ggtcgtcaac actgagaaag 1501 acaaaaacct ggatgtgcag ccagtacctg gcagtggcag tgccttggtg aggctgctcc 1561 aggagggcac ctgcaagctt gatgagattg gctcctacag tgaagagaag ctgcagcacc 1621 tgctaaggca gtgtggaatc ccctttgggg cagaagactc caaggaccag ctctgcttct 1681 ccttgttggc cctctacgaa tctgtacaga atggagctag agctatacgg cccccacgtc 1741 acttcacagg tggtaaaatc tacaaggtgt gcccccatca ggtggtctgc ggctccaagt 1801 atcttgtgcg aggtgagagt gcccgtgacc atgtggacct gcttgcctct tcccgccact 1861 ggccgcctgt ctatgtggta gatatggcca cgtcagtggc cctgtgtgct gacctctgct 1921 acccagagct gactaaccag atgtggggga ggaaccaggg ctgtttctct agccccacag 1981 agccacctgt gagtgtgtcc tgcccagagc tcttggacca gcattatact gtggacatga 2041 cagaaactga gcactctatc cagcacccag tcaccaagac tgccacgcgg cgcatcgtcc 2101 atgcaggcct acagcccaat cctggtgacc ccagtgctgg gcaccactcc ttggccctgt 2161 gccctgaatt ggcaccttac gcaaccatcc tggcctccat cgtggacagc aaaccaaacg 2221 gtgtccgcca gcggcccatt gccttcgaca atgccactca ctattacctc tacaaccgcc 2281 tcatggactt cctcaccagc cgcgaaattg tcaatcgtca gatccatgac attgtacaga 2341 gctgccagcc tggtgaggtg gtcattcgtg acaccctcta ccgccttggg gttgctcaga 2401 tcaagacaga gacagaggag gagggtgagg aagaggaggt ggccgcagtg gcagaataag 2461 ccaggctgtt gtacagggac tacaccatct ctcaagccat agtaaggccc ttgcctgagg 2521 cagagctatc caggggacct gcagaagtgg tctcctgtgg ggagggcctc tgactgctgg 2581 gactgaccaa agagcttcca ttccctgagc atggtgggac ccagggtcct cagttctcaa 2641 ccctccaggg gtcaggagtg gtaccaggaa acctcttctg gccccgagag agcacttggg 2701 ggacacggta tgtttaatgg aggggaggct gagggaaagg ctggtagctg gtgggttccg 2761 tggggcctgc tgtgtgggtc agggtggagg tcctgggtgg gctaaggcgt gagccccagc 2821 actaggtggg aaggctgctg aggtctctcc cacccctgag gagccctggt ttcagccccc 2881 tcagtctgat gaattgctta gcctgttgcc tttgactagg ggcctgggtg gcctcattaa 2941 ctctaggggt ccctttgggc tcttgattct ccctgaagga gggatgcatt tctctcttgc 3001 tcttcctgta cccacatttg ggggaagctg aggagggagg aacagtcagc cacagctctc 3061 ttccagcact gtcctctcca ccccaagctt tgaggaagag catccccttc ctcctttccc 3121 tggccactgc tgctgcagcc aatatcctct ctgggcctgg gaccctctcc acagagggga 3181 tgtggtccct ggtcatgaca taacctagca gcagtaggaa aaactccctt ctatgaaggg 3241 gaagcagact gggccataag gaaacagcag gactggctca agtgcccaag gtttgtttag 3301 ggcctgggaa ttggccatgt gttaatttat tgagtggagt aggtggcttt ttttccctcc 3361 ctcttccccc aacaagaata aagtttatta aattaaaaaa aaaaaaaaaa aaa //