LOCUS BC005880 3413 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens HMG box domain containing 3, mRNA (cDNA clone
IMAGE:3529534), partial cds.
ACCESSION BC005880
VERSION BC005880.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3413)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3413)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC005880.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: k Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..3413
/db_xref="H-InvDB:HIT000086549"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3529534"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3413
/gene="HMGXB3"
/gene_synonym="SMF"
/db_xref="GeneID:22993"
/db_xref="HGNC:HGNC:28982"
CDS <1..2459
/gene="HMGXB3"
/gene_synonym="SMF"
/codon_start=3
/product="HMGXB3 protein"
/protein_id="AAH05880.2"
/db_xref="GeneID:22993"
/db_xref="HGNC:HGNC:28982"
/translation="TSSPLPAPKKPTGVDLLTPGSRAPELKGRARGKPSLLAAARPMR
AILPAPVNVGRGSSMGLPRARQAFSLSDKTPSVRTCGLKPSTLKQLGQPIQQPSGPGE
VKLPSGPSNRTSQVKVVEVKPDMFPPYKYSCTVTLDLGLATSRGRGKCKNPSCSYVYT
NRHKPRICPSCGVNLAKDRTEKTTKAIEVSSPLPDVLNATEPLSTAQREIQRQSTLQL
LRKVLQIPENESELAEVFALIHELNSSRLILSNVSEETVTIEQTSWSNYYESPSTQCL
LCSSPLFKGGQNSLAGPQECWLLTASRLQTVTAQVKMCLNPHCLALHSFIDIYTGLFN
VGNKLLVSLDLLFAIRNQIKLGEDPRVSINVVLKSVQEQTEKTLTSEELSQLQELLCN
GYWAFECLTVRDYNDMICGICGVAPKVEMAQRSEQNVLALKSVEFTWPEFLGSNEVNV
EDFWATMETEVIEQVAFPASIPITKFDASVIAPFFPPLMRGAVVVNTEKDKNLDVQPV
PGSGSALVRLLQEGTCKLDEIGSYSEEKLQHLLRQCGIPFGAEDSKDQLCFSLLALYE
SVQNGARAIRPPRHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPVY
VVDMATSVALCADLCYPELTNQMWGRNQGCFSSPTEPPVSVSCPELLDQHYTVDMTET
EHSIQHPVTKTATRRIVHAGLQPNPGDPSAGHHSLALCPELAPYATILASIVDSKPNG
VRQRPIAFDNATHYYLYNRLMDFLTSREIVNRQIHDIVQSCQPGEVVIRDTLYRLGVA
QIKTETEEEGEEEEVAAVAE"
BASE COUNT 784 a 935 c 942 g 752 t
ORIGIN
1 gtacctccag tccactccct gctcctaaaa aacctacagg agttgacctg cttacccctg
61 ggtccagagc tccagagctt aaaggcagag cacggggcaa gccctcatta ctggctgcag
121 caagacccat gagagcaatt ttgccagccc cagttaacgt ggggcgaggc agcagcatgg
181 gactgcccag ggccaggcag gccttttccc tgagtgataa gactccctct gtgaggactt
241 gtggtctgaa gccaagcaca ctgaagcagc tgggccagcc cattcaacag ccatctggcc
301 ctggtgaggt gaagctacca agtggcccat ccaacaggac ttctcaggtg aaagttgtgg
361 aggtcaagcc cgatatgttt cctccatata agtacagctg cactgtcaca ttggatttgg
421 gcctggctac atcaagaggc cggggaaagt gcaagaatcc ctcttgtagc tatgtctaca
481 ccaacaggca caaacctcga atttgtccca gctgtggtgt taaccttgcc aaagaccgga
541 ctgagaaaac caccaaggct atcgaggtga gctcaccact cccagatgta ctgaatgcca
601 cagagcccct gagcacagcc cagagggaga tccagcgcca gtccacactg cagctgctgc
661 gcaaagtcct gcagattcct gagaatgagt cagagctggc tgaggtcttc gccttgattc
721 atgaactcaa cagctctcga cttatcttgt ccaacgtgag tgaggagaca gtcaccatcg
781 agcaaacctc ttggtcgaat tattatgagt ctccgtccac gcagtgcctt ctctgtagca
841 gcccattatt caaaggggga caaaactccc tggctgggcc ccaggagtgc tggctgctga
901 cagccagccg tctgcagaca gtgactgccc aggtgaagat gtgtctgaac ccccattgtc
961 tggccctgca cagcttcata gacatctaca caggtctctt taatgtgggg aacaagctgc
1021 tggtaagcct ggacttgctt tttgcaatca gaaatcagat caagctcgga gaggacccca
1081 gagtgtccat caatgttgtt ctgaagtcgg tgcaggagca gacagagaag actctgacct
1141 cggaggagct gagccagctg caggagctgc tgtgcaatgg ctattgggcc tttgagtgcc
1201 tcactgtccg agactacaat gacatgatct gtggcatctg tggtgtggcc cccaaagtgg
1261 aaatggctca gaggagtgaa cagaatgtgc tagcactgaa gagcgtggag ttcacctggc
1321 ctgaattcct gggctctaat gaggtaaatg tggaggactt ttgggccacg atggagacag
1381 aggtgattga gcaggtggca tttcctgcca gcatccctat caccaaattt gatgcgtctg
1441 ttattgcccc cttcttccca ccactcatga gaggagctgt ggtcgtcaac actgagaaag
1501 acaaaaacct ggatgtgcag ccagtacctg gcagtggcag tgccttggtg aggctgctcc
1561 aggagggcac ctgcaagctt gatgagattg gctcctacag tgaagagaag ctgcagcacc
1621 tgctaaggca gtgtggaatc ccctttgggg cagaagactc caaggaccag ctctgcttct
1681 ccttgttggc cctctacgaa tctgtacaga atggagctag agctatacgg cccccacgtc
1741 acttcacagg tggtaaaatc tacaaggtgt gcccccatca ggtggtctgc ggctccaagt
1801 atcttgtgcg aggtgagagt gcccgtgacc atgtggacct gcttgcctct tcccgccact
1861 ggccgcctgt ctatgtggta gatatggcca cgtcagtggc cctgtgtgct gacctctgct
1921 acccagagct gactaaccag atgtggggga ggaaccaggg ctgtttctct agccccacag
1981 agccacctgt gagtgtgtcc tgcccagagc tcttggacca gcattatact gtggacatga
2041 cagaaactga gcactctatc cagcacccag tcaccaagac tgccacgcgg cgcatcgtcc
2101 atgcaggcct acagcccaat cctggtgacc ccagtgctgg gcaccactcc ttggccctgt
2161 gccctgaatt ggcaccttac gcaaccatcc tggcctccat cgtggacagc aaaccaaacg
2221 gtgtccgcca gcggcccatt gccttcgaca atgccactca ctattacctc tacaaccgcc
2281 tcatggactt cctcaccagc cgcgaaattg tcaatcgtca gatccatgac attgtacaga
2341 gctgccagcc tggtgaggtg gtcattcgtg acaccctcta ccgccttggg gttgctcaga
2401 tcaagacaga gacagaggag gagggtgagg aagaggaggt ggccgcagtg gcagaataag
2461 ccaggctgtt gtacagggac tacaccatct ctcaagccat agtaaggccc ttgcctgagg
2521 cagagctatc caggggacct gcagaagtgg tctcctgtgg ggagggcctc tgactgctgg
2581 gactgaccaa agagcttcca ttccctgagc atggtgggac ccagggtcct cagttctcaa
2641 ccctccaggg gtcaggagtg gtaccaggaa acctcttctg gccccgagag agcacttggg
2701 ggacacggta tgtttaatgg aggggaggct gagggaaagg ctggtagctg gtgggttccg
2761 tggggcctgc tgtgtgggtc agggtggagg tcctgggtgg gctaaggcgt gagccccagc
2821 actaggtggg aaggctgctg aggtctctcc cacccctgag gagccctggt ttcagccccc
2881 tcagtctgat gaattgctta gcctgttgcc tttgactagg ggcctgggtg gcctcattaa
2941 ctctaggggt ccctttgggc tcttgattct ccctgaagga gggatgcatt tctctcttgc
3001 tcttcctgta cccacatttg ggggaagctg aggagggagg aacagtcagc cacagctctc
3061 ttccagcact gtcctctcca ccccaagctt tgaggaagag catccccttc ctcctttccc
3121 tggccactgc tgctgcagcc aatatcctct ctgggcctgg gaccctctcc acagagggga
3181 tgtggtccct ggtcatgaca taacctagca gcagtaggaa aaactccctt ctatgaaggg
3241 gaagcagact gggccataag gaaacagcag gactggctca agtgcccaag gtttgtttag
3301 ggcctgggaa ttggccatgt gttaatttat tgagtggagt aggtggcttt ttttccctcc
3361 ctcttccccc aacaagaata aagtttatta aattaaaaaa aaaaaaaaaa aaa
//