LOCUS BC005848 4322 bp mRNA linear HUM 28-OCT-2003 DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, mRNA (cDNA clone IMAGE:2958804), partial cds. ACCESSION BC005848 VERSION BC005848.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4322) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4322) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Oct 28, 2003 this sequence version replaced BC005848.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 2 Row: i Column: 6. FEATURES Location/Qualifiers source 1..4322 /db_xref="H-InvDB:HIT000032476" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:2958804" /tissue_type="Kidney, renal cell adenocarcinoma" /clone_lib="NIH_MGC_14" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..4322 /gene="DDX54" /gene_synonym="APR-5" /gene_synonym="DP97" /gene_synonym="MGC2835" /db_xref="GeneID:79039" CDS <1..2595 /gene="DDX54" /gene_synonym="APR-5" /gene_synonym="DP97" /gene_synonym="MGC2835" /codon_start=1 /product="DDX54 protein" /protein_id="AAH05848.2" /db_xref="GeneID:79039" /translation="AQWRKKKGLRKRRGAASQARGSDSEDGEFEIQAEDDARARKLGP GRPLPTFPTSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVP TPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRE LALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMS LKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFSATLPKLLVEFARAGL TEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVATKHHA EYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDN VINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLARPL KEPSGVAGVDGMLGRVPQSVVDEEDSGLQSTLEASLELRGLARVADNAQQQYVRSRPA PSPESIKRAKEMDLVGLGLHPLFSSRFEEEELQRLRLVDSIKNYRSRATIFEINASSR DLCSQVMRAKRQKDRKAIARFQQGQQGRQEQQEGPVGPAPSRPALQEKQPEKEEEEEA GESVEDIFSEVVGRKRQRSGPNRGAKRRREEARQRDQEFYIPYRPKDFDSERGLSISG EGGAFEQQAAGAVLDLMGDEAQNLTRGRQQLKWDRKKKRFVGQSGQEDKKKIKTESGR YISSSYKRDLYQKWKQKQKIDDRDSDEEGASDRRGPERRGGKRDRGQGASRPHAPGTP AGRVRPELKTKQQILKQRRRAQKLHFLQRGGLKQLSARNRRRVQELQQGAFGRGARSK KGKMRKRM" misc_feature 157..1356 /gene="DDX54" /gene_synonym="APR-5" /gene_synonym="DP97" /gene_synonym="MGC2835" /note="SrmB; Region: Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]" /db_xref="CDD:COG0513" BASE COUNT 949 a 1263 c 1330 g 780 t ORIGIN 1 gcccagtgga ggaagaagaa agggctccgg aagcgccgag gcgcggcctc ccaggcccgc 61 ggcagcgact cggaggacgg cgagtttgag atccaggcgg aagatgacgc ccgggcccgg 121 aagctgggac ctggaagacc cctgcccacc ttccccacct cggaatgcac ctcggatgtg 181 gagccggaca cccgggagat ggtgcgtgcc cagaacaaga agaagaagaa gtctggaggc 241 ttccagtcca tgggcctgag ctacccggtg ttcaaaggca tcatgaagaa ggggtacaag 301 gtgccaacac ccatccagag gaagaccatc ccggtgatct tggatggcaa ggacgtggtg 361 gccatggccc ggacgggcag tggcaagaca gcctgcttcc tcctcccaat gttcgagcgg 421 ctcaagaccc acagtgccca gaccggggcc cgcgccctca tcctctcgcc gacccgagag 481 ctggccctgc agaccctgaa gttcactaag gagctaggca agttcactgg cctcaagact 541 gccctgatcc tgggtggaga caggatggaa gaccagtttg cagccctgca cgaaaatccc 601 gacataatta ttgccacgcc cggacggttg gtgcatgtgg ctgtggaaat gagcctgaag 661 ctgcagagtg tggaatacgt ggtgttcgat gaagctgacc ggctttttga aatgggtttc 721 gcagagcagc tgcaggagat catcgcccgc ctccccgggg gccaccagac ggtgctgttc 781 tccgccacgc tgcccaaact gctggtggaa tttgcccggg ctggcctcac ggagcccgtg 841 ctcatccggc ttgacgtgga taccaagctc aacgagcagc tgaagacctc cttcttcctc 901 gtgcgggagg acaccaaggc tgccgtgctg ctccacctgc tgcacaacgt ggtgcggccc 961 caggaccaga ccgtggtgtt tgtggccacg aagcaccacg ccgagtacct cactgagctg 1021 ctgacgaccc agcgggtgag ctgcgcccac atctacagtg ccctagaccc gacagcccgc 1081 aagatcaatc tcgccaaatt cacgcttggc aagtgctcca ctctcattgt gactgacctg 1141 gccgcccgag gcctggacat cccgctgctg gacaatgtca tcaactacag cttccccgcc 1201 aagggcaaac tcttcctgca ccgcgtgggc cgtgtggctc gggctggccg aagtggcaca 1261 gcctactcct tggtggcccc tgatgaaatc ccctacctgc tggatctgca cctgttcctg 1321 ggccgctccc tcaccctcgc ccgacccctc aaggagccct caggtgtggc cggtgtggat 1381 ggcatgctgg gtcgggtgcc acagagtgtg gtggacgagg aggacagtgg tctgcagagc 1441 accctggagg catcgctgga gctacggggc ctggcccgcg ttgctgataa cgcccagcag 1501 cagtatgtgc gctcacgccc ggcgccctcg cctgagtcca tcaagagggc caaggagatg 1561 gaccttgtgg ggctgggcct gcaccccctc ttcagctcgc gttttgagga ggaggagctg 1621 cagcggctga ggctggtgga cagcataaag aactaccgct cccgggcgac tatctttgag 1681 atcaacgcct ccagccgaga cctgtgcagc caggtgatgc gcgccaagcg gcagaaggac 1741 cgcaaggcca tcgcccgctt ccagcaggga cagcaggggc ggcaggagca gcaggagggc 1801 ccagtgggcc cagccccgag ccgcccagca ctgcaggaga agcagcctga gaaggaggag 1861 gaggaggagg cgggagagag tgtggaggac attttctcag aggtcgtggg ccggaagcgg 1921 cagcggtcag gacccaacag gggagccaag aggcggaggg aggaggcccg gcagcgggac 1981 caggaattct acatccccta ccggcccaag gactttgaca gcgagcgggg cctgagcatc 2041 agcggggaag ggggagcctt tgagcagcag gcagctggcg ctgtcctgga cttgatgggg 2101 gatgaagccc agaacctgac gaggggccgg cagcagctca agtgggaccg taagaagaag 2161 cggtttgtgg gacagtcagg acaggaagac aagaagaaga ttaagacaga gagcggccgc 2221 tacatcagca gctcctacaa gcgagacctc tatcagaagt ggaaacagaa acagaaaatt 2281 gatgatcgtg actcggacga agaaggggca tctgaccggc gaggcccaga gcgaagaggt 2341 gggaagcgag accgtggcca aggtgcatcc cggccccacg ccccaggcac ccctgcaggc 2401 cgagtccgcc cggaactcaa gaccaagcag cagatcctga agcagcggcg ccgggcccag 2461 aagctgcact tcctgcagcg tggtggcctc aagcagctct ctgcccgcaa ccgccgccgc 2521 gtccaggagc tgcagcaggg cgccttcggc cggggtgccc gctccaagaa gggcaagatg 2581 cggaagagga tgtgaggacc aggacccagc cccgtggctc cttgattggc cttagggtgg 2641 gcatcagcag acgttcccgt gcaccactgt gtgcctggcc ctgtgctggg cactgggggc 2701 actccctgca ggagccatca tctgtgaaaa ggagcactgt atggccacag aagggcagca 2761 gctgcgtcag cctaagacag agacatttga acagggcctt gaagggtgtg caggagttcg 2821 ccagcaaagc caggcaggcc aagacttgag ttggcaactc agctgctgct gcttccatgt 2881 gttctgggtt cagaggtcat ggctgcaccg gtcagagccc tgagtgcctc agggtttggc 2941 aatggaattt ttaatgtaat aaatctttat tgagcactgc tggtggccag gagtgcggtc 3001 tacttgggga actggaatgg agagacccag gtactaaaat cccagctaac gtggcagagg 3061 agttgcgggt ctcctgaggg tgagttctgc tgccttgtcc atttagcgat gaggaaagtg 3121 aagctcagag cacaaaccag gtgccagagg cgggagttgg tcccccttcc tcccactgga 3181 catggttgca gctgggagtg ggctggggga ggggaacagg atgcccagcc cagggggcaa 3241 ggacacagct gctcccctct ggctatgaag aggttaacgc ggcccctcca cacctggagg 3301 tcagaacctg gcctgtcctc tgtcttcttg ccacccaccc cctgtttgag gttctgagaa 3361 ggtcaagggc agccccagca gctggattct caggctgggc ccctcacctg gcagagtcca 3421 tagtggaggg ggccttggtg atctctcatc tagcatggac cctgttctga gacctgacaa 3481 agagtttttt ttcatgcccc aaccaccctg gcagggaggg cctggtctga tctcatttta 3541 gaggcagttg ccccacacat agccccttga ccttcccatc acctcctcat cagggcctgc 3601 atttatggag tgcttgctat gtgcccctca tggcaggccc acagcactct gaacaggcac 3661 agccctccca tcttcccaat gaggaaacgg attcaggaag agccactcag tccacacccc 3721 attggaaatg tgggccctcc tatctcaggg tctctcaggg gttccctctc ccgctgctca 3781 cctgtgtcag ggctaggagg caggggctgc aggctcagcc tgacccaggc cggccagcat 3841 ggcagagagg tcctgcatga acagcttcac ctgggggggc ccagcacgaa gtcacatccc 3901 agccccagag tcactgtcca gcccccaccc ctcaacacgc gggggaggcc gaaaggtagg 3961 gcggggactg gagatcccct cattaaaaga acagtgatga tggtggttcc cagaggtggt 4021 gactgagatc ctaaaccgtt ctgggttttg aaagcctcag gccaaccttc ccaactgctg 4081 cgtgagcaga caccttcaca gcttcctcgc tgctgtcacc tgcactatcc aattagtatt 4141 ttcatttaca tcaatcagct ttattttctt gtaactggat cagtcatatt cattggtttg 4201 tgacctactc ttatctccgt gggtggctct ccttttgttt taattaactt ctttatgaat 4261 atgaacttaa taaataccat ggatccattg taaaaactaa aaaaaaaaaa aaaaaaaaaa 4321 aa //