LOCUS       BC005848                4322 bp    mRNA    linear   HUM 28-OCT-2003
DEFINITION  Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, mRNA (cDNA
            clone IMAGE:2958804), partial cds.
ACCESSION   BC005848
VERSION     BC005848.2
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4322)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 4322)
  AUTHORS   Strausberg,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-APR-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Cancer Genomics Office, National Cancer
            Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
            USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     On Oct 28, 2003 this sequence version replaced BC005848.1.
            Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: DCTD/DTP
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Institute for Systems Biology
            http://www.systemsbiology.org
            contact: amadan@systemsbiology.org
            Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
            Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 2 Row: i Column: 6.
FEATURES             Location/Qualifiers
     source          1..4322
                     /db_xref="H-InvDB:HIT000032476"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:2958804"
                     /tissue_type="Kidney, renal cell adenocarcinoma"
                     /clone_lib="NIH_MGC_14"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
     gene            <1..4322
                     /gene="DDX54"
                     /gene_synonym="APR-5"
                     /gene_synonym="DP97"
                     /gene_synonym="MGC2835"
                     /db_xref="GeneID:79039"
     CDS             <1..2595
                     /gene="DDX54"
                     /gene_synonym="APR-5"
                     /gene_synonym="DP97"
                     /gene_synonym="MGC2835"
                     /codon_start=1
                     /product="DDX54 protein"
                     /protein_id="AAH05848.2"
                     /db_xref="GeneID:79039"
                     /translation="AQWRKKKGLRKRRGAASQARGSDSEDGEFEIQAEDDARARKLGP
                     GRPLPTFPTSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVP
                     TPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRE
                     LALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMS
                     LKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFSATLPKLLVEFARAGL
                     TEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVATKHHA
                     EYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDN
                     VINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLARPL
                     KEPSGVAGVDGMLGRVPQSVVDEEDSGLQSTLEASLELRGLARVADNAQQQYVRSRPA
                     PSPESIKRAKEMDLVGLGLHPLFSSRFEEEELQRLRLVDSIKNYRSRATIFEINASSR
                     DLCSQVMRAKRQKDRKAIARFQQGQQGRQEQQEGPVGPAPSRPALQEKQPEKEEEEEA
                     GESVEDIFSEVVGRKRQRSGPNRGAKRRREEARQRDQEFYIPYRPKDFDSERGLSISG
                     EGGAFEQQAAGAVLDLMGDEAQNLTRGRQQLKWDRKKKRFVGQSGQEDKKKIKTESGR
                     YISSSYKRDLYQKWKQKQKIDDRDSDEEGASDRRGPERRGGKRDRGQGASRPHAPGTP
                     AGRVRPELKTKQQILKQRRRAQKLHFLQRGGLKQLSARNRRRVQELQQGAFGRGARSK
                     KGKMRKRM"
     misc_feature    157..1356
                     /gene="DDX54"
                     /gene_synonym="APR-5"
                     /gene_synonym="DP97"
                     /gene_synonym="MGC2835"
                     /note="SrmB; Region: Superfamily II DNA and RNA helicases
                     [DNA replication, recombination, and repair /
                     Transcription / Translation, ribosomal structure and
                     biogenesis]"
                     /db_xref="CDD:COG0513"
BASE COUNT          949 a         1263 c         1330 g          780 t
ORIGIN      
        1 gcccagtgga ggaagaagaa agggctccgg aagcgccgag gcgcggcctc ccaggcccgc
       61 ggcagcgact cggaggacgg cgagtttgag atccaggcgg aagatgacgc ccgggcccgg
      121 aagctgggac ctggaagacc cctgcccacc ttccccacct cggaatgcac ctcggatgtg
      181 gagccggaca cccgggagat ggtgcgtgcc cagaacaaga agaagaagaa gtctggaggc
      241 ttccagtcca tgggcctgag ctacccggtg ttcaaaggca tcatgaagaa ggggtacaag
      301 gtgccaacac ccatccagag gaagaccatc ccggtgatct tggatggcaa ggacgtggtg
      361 gccatggccc ggacgggcag tggcaagaca gcctgcttcc tcctcccaat gttcgagcgg
      421 ctcaagaccc acagtgccca gaccggggcc cgcgccctca tcctctcgcc gacccgagag
      481 ctggccctgc agaccctgaa gttcactaag gagctaggca agttcactgg cctcaagact
      541 gccctgatcc tgggtggaga caggatggaa gaccagtttg cagccctgca cgaaaatccc
      601 gacataatta ttgccacgcc cggacggttg gtgcatgtgg ctgtggaaat gagcctgaag
      661 ctgcagagtg tggaatacgt ggtgttcgat gaagctgacc ggctttttga aatgggtttc
      721 gcagagcagc tgcaggagat catcgcccgc ctccccgggg gccaccagac ggtgctgttc
      781 tccgccacgc tgcccaaact gctggtggaa tttgcccggg ctggcctcac ggagcccgtg
      841 ctcatccggc ttgacgtgga taccaagctc aacgagcagc tgaagacctc cttcttcctc
      901 gtgcgggagg acaccaaggc tgccgtgctg ctccacctgc tgcacaacgt ggtgcggccc
      961 caggaccaga ccgtggtgtt tgtggccacg aagcaccacg ccgagtacct cactgagctg
     1021 ctgacgaccc agcgggtgag ctgcgcccac atctacagtg ccctagaccc gacagcccgc
     1081 aagatcaatc tcgccaaatt cacgcttggc aagtgctcca ctctcattgt gactgacctg
     1141 gccgcccgag gcctggacat cccgctgctg gacaatgtca tcaactacag cttccccgcc
     1201 aagggcaaac tcttcctgca ccgcgtgggc cgtgtggctc gggctggccg aagtggcaca
     1261 gcctactcct tggtggcccc tgatgaaatc ccctacctgc tggatctgca cctgttcctg
     1321 ggccgctccc tcaccctcgc ccgacccctc aaggagccct caggtgtggc cggtgtggat
     1381 ggcatgctgg gtcgggtgcc acagagtgtg gtggacgagg aggacagtgg tctgcagagc
     1441 accctggagg catcgctgga gctacggggc ctggcccgcg ttgctgataa cgcccagcag
     1501 cagtatgtgc gctcacgccc ggcgccctcg cctgagtcca tcaagagggc caaggagatg
     1561 gaccttgtgg ggctgggcct gcaccccctc ttcagctcgc gttttgagga ggaggagctg
     1621 cagcggctga ggctggtgga cagcataaag aactaccgct cccgggcgac tatctttgag
     1681 atcaacgcct ccagccgaga cctgtgcagc caggtgatgc gcgccaagcg gcagaaggac
     1741 cgcaaggcca tcgcccgctt ccagcaggga cagcaggggc ggcaggagca gcaggagggc
     1801 ccagtgggcc cagccccgag ccgcccagca ctgcaggaga agcagcctga gaaggaggag
     1861 gaggaggagg cgggagagag tgtggaggac attttctcag aggtcgtggg ccggaagcgg
     1921 cagcggtcag gacccaacag gggagccaag aggcggaggg aggaggcccg gcagcgggac
     1981 caggaattct acatccccta ccggcccaag gactttgaca gcgagcgggg cctgagcatc
     2041 agcggggaag ggggagcctt tgagcagcag gcagctggcg ctgtcctgga cttgatgggg
     2101 gatgaagccc agaacctgac gaggggccgg cagcagctca agtgggaccg taagaagaag
     2161 cggtttgtgg gacagtcagg acaggaagac aagaagaaga ttaagacaga gagcggccgc
     2221 tacatcagca gctcctacaa gcgagacctc tatcagaagt ggaaacagaa acagaaaatt
     2281 gatgatcgtg actcggacga agaaggggca tctgaccggc gaggcccaga gcgaagaggt
     2341 gggaagcgag accgtggcca aggtgcatcc cggccccacg ccccaggcac ccctgcaggc
     2401 cgagtccgcc cggaactcaa gaccaagcag cagatcctga agcagcggcg ccgggcccag
     2461 aagctgcact tcctgcagcg tggtggcctc aagcagctct ctgcccgcaa ccgccgccgc
     2521 gtccaggagc tgcagcaggg cgccttcggc cggggtgccc gctccaagaa gggcaagatg
     2581 cggaagagga tgtgaggacc aggacccagc cccgtggctc cttgattggc cttagggtgg
     2641 gcatcagcag acgttcccgt gcaccactgt gtgcctggcc ctgtgctggg cactgggggc
     2701 actccctgca ggagccatca tctgtgaaaa ggagcactgt atggccacag aagggcagca
     2761 gctgcgtcag cctaagacag agacatttga acagggcctt gaagggtgtg caggagttcg
     2821 ccagcaaagc caggcaggcc aagacttgag ttggcaactc agctgctgct gcttccatgt
     2881 gttctgggtt cagaggtcat ggctgcaccg gtcagagccc tgagtgcctc agggtttggc
     2941 aatggaattt ttaatgtaat aaatctttat tgagcactgc tggtggccag gagtgcggtc
     3001 tacttgggga actggaatgg agagacccag gtactaaaat cccagctaac gtggcagagg
     3061 agttgcgggt ctcctgaggg tgagttctgc tgccttgtcc atttagcgat gaggaaagtg
     3121 aagctcagag cacaaaccag gtgccagagg cgggagttgg tcccccttcc tcccactgga
     3181 catggttgca gctgggagtg ggctggggga ggggaacagg atgcccagcc cagggggcaa
     3241 ggacacagct gctcccctct ggctatgaag aggttaacgc ggcccctcca cacctggagg
     3301 tcagaacctg gcctgtcctc tgtcttcttg ccacccaccc cctgtttgag gttctgagaa
     3361 ggtcaagggc agccccagca gctggattct caggctgggc ccctcacctg gcagagtcca
     3421 tagtggaggg ggccttggtg atctctcatc tagcatggac cctgttctga gacctgacaa
     3481 agagtttttt ttcatgcccc aaccaccctg gcagggaggg cctggtctga tctcatttta
     3541 gaggcagttg ccccacacat agccccttga ccttcccatc acctcctcat cagggcctgc
     3601 atttatggag tgcttgctat gtgcccctca tggcaggccc acagcactct gaacaggcac
     3661 agccctccca tcttcccaat gaggaaacgg attcaggaag agccactcag tccacacccc
     3721 attggaaatg tgggccctcc tatctcaggg tctctcaggg gttccctctc ccgctgctca
     3781 cctgtgtcag ggctaggagg caggggctgc aggctcagcc tgacccaggc cggccagcat
     3841 ggcagagagg tcctgcatga acagcttcac ctgggggggc ccagcacgaa gtcacatccc
     3901 agccccagag tcactgtcca gcccccaccc ctcaacacgc gggggaggcc gaaaggtagg
     3961 gcggggactg gagatcccct cattaaaaga acagtgatga tggtggttcc cagaggtggt
     4021 gactgagatc ctaaaccgtt ctgggttttg aaagcctcag gccaaccttc ccaactgctg
     4081 cgtgagcaga caccttcaca gcttcctcgc tgctgtcacc tgcactatcc aattagtatt
     4141 ttcatttaca tcaatcagct ttattttctt gtaactggat cagtcatatt cattggtttg
     4201 tgacctactc ttatctccgt gggtggctct ccttttgttt taattaactt ctttatgaat
     4261 atgaacttaa taaataccat ggatccattg taaaaactaa aaaaaaaaaa aaaaaaaaaa
     4321 aa
//