LOCUS BC005848 4322 bp mRNA linear HUM 28-OCT-2003
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, mRNA (cDNA
clone IMAGE:2958804), partial cds.
ACCESSION BC005848
VERSION BC005848.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4322)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4322)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 28, 2003 this sequence version replaced BC005848.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: i Column: 6.
FEATURES Location/Qualifiers
source 1..4322
/db_xref="H-InvDB:HIT000032476"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2958804"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..4322
/gene="DDX54"
/gene_synonym="APR-5"
/gene_synonym="DP97"
/gene_synonym="MGC2835"
/db_xref="GeneID:79039"
CDS <1..2595
/gene="DDX54"
/gene_synonym="APR-5"
/gene_synonym="DP97"
/gene_synonym="MGC2835"
/codon_start=1
/product="DDX54 protein"
/protein_id="AAH05848.2"
/db_xref="GeneID:79039"
/translation="AQWRKKKGLRKRRGAASQARGSDSEDGEFEIQAEDDARARKLGP
GRPLPTFPTSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVP
TPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRE
LALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMS
LKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFSATLPKLLVEFARAGL
TEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVATKHHA
EYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDN
VINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLARPL
KEPSGVAGVDGMLGRVPQSVVDEEDSGLQSTLEASLELRGLARVADNAQQQYVRSRPA
PSPESIKRAKEMDLVGLGLHPLFSSRFEEEELQRLRLVDSIKNYRSRATIFEINASSR
DLCSQVMRAKRQKDRKAIARFQQGQQGRQEQQEGPVGPAPSRPALQEKQPEKEEEEEA
GESVEDIFSEVVGRKRQRSGPNRGAKRRREEARQRDQEFYIPYRPKDFDSERGLSISG
EGGAFEQQAAGAVLDLMGDEAQNLTRGRQQLKWDRKKKRFVGQSGQEDKKKIKTESGR
YISSSYKRDLYQKWKQKQKIDDRDSDEEGASDRRGPERRGGKRDRGQGASRPHAPGTP
AGRVRPELKTKQQILKQRRRAQKLHFLQRGGLKQLSARNRRRVQELQQGAFGRGARSK
KGKMRKRM"
misc_feature 157..1356
/gene="DDX54"
/gene_synonym="APR-5"
/gene_synonym="DP97"
/gene_synonym="MGC2835"
/note="SrmB; Region: Superfamily II DNA and RNA helicases
[DNA replication, recombination, and repair /
Transcription / Translation, ribosomal structure and
biogenesis]"
/db_xref="CDD:COG0513"
BASE COUNT 949 a 1263 c 1330 g 780 t
ORIGIN
1 gcccagtgga ggaagaagaa agggctccgg aagcgccgag gcgcggcctc ccaggcccgc
61 ggcagcgact cggaggacgg cgagtttgag atccaggcgg aagatgacgc ccgggcccgg
121 aagctgggac ctggaagacc cctgcccacc ttccccacct cggaatgcac ctcggatgtg
181 gagccggaca cccgggagat ggtgcgtgcc cagaacaaga agaagaagaa gtctggaggc
241 ttccagtcca tgggcctgag ctacccggtg ttcaaaggca tcatgaagaa ggggtacaag
301 gtgccaacac ccatccagag gaagaccatc ccggtgatct tggatggcaa ggacgtggtg
361 gccatggccc ggacgggcag tggcaagaca gcctgcttcc tcctcccaat gttcgagcgg
421 ctcaagaccc acagtgccca gaccggggcc cgcgccctca tcctctcgcc gacccgagag
481 ctggccctgc agaccctgaa gttcactaag gagctaggca agttcactgg cctcaagact
541 gccctgatcc tgggtggaga caggatggaa gaccagtttg cagccctgca cgaaaatccc
601 gacataatta ttgccacgcc cggacggttg gtgcatgtgg ctgtggaaat gagcctgaag
661 ctgcagagtg tggaatacgt ggtgttcgat gaagctgacc ggctttttga aatgggtttc
721 gcagagcagc tgcaggagat catcgcccgc ctccccgggg gccaccagac ggtgctgttc
781 tccgccacgc tgcccaaact gctggtggaa tttgcccggg ctggcctcac ggagcccgtg
841 ctcatccggc ttgacgtgga taccaagctc aacgagcagc tgaagacctc cttcttcctc
901 gtgcgggagg acaccaaggc tgccgtgctg ctccacctgc tgcacaacgt ggtgcggccc
961 caggaccaga ccgtggtgtt tgtggccacg aagcaccacg ccgagtacct cactgagctg
1021 ctgacgaccc agcgggtgag ctgcgcccac atctacagtg ccctagaccc gacagcccgc
1081 aagatcaatc tcgccaaatt cacgcttggc aagtgctcca ctctcattgt gactgacctg
1141 gccgcccgag gcctggacat cccgctgctg gacaatgtca tcaactacag cttccccgcc
1201 aagggcaaac tcttcctgca ccgcgtgggc cgtgtggctc gggctggccg aagtggcaca
1261 gcctactcct tggtggcccc tgatgaaatc ccctacctgc tggatctgca cctgttcctg
1321 ggccgctccc tcaccctcgc ccgacccctc aaggagccct caggtgtggc cggtgtggat
1381 ggcatgctgg gtcgggtgcc acagagtgtg gtggacgagg aggacagtgg tctgcagagc
1441 accctggagg catcgctgga gctacggggc ctggcccgcg ttgctgataa cgcccagcag
1501 cagtatgtgc gctcacgccc ggcgccctcg cctgagtcca tcaagagggc caaggagatg
1561 gaccttgtgg ggctgggcct gcaccccctc ttcagctcgc gttttgagga ggaggagctg
1621 cagcggctga ggctggtgga cagcataaag aactaccgct cccgggcgac tatctttgag
1681 atcaacgcct ccagccgaga cctgtgcagc caggtgatgc gcgccaagcg gcagaaggac
1741 cgcaaggcca tcgcccgctt ccagcaggga cagcaggggc ggcaggagca gcaggagggc
1801 ccagtgggcc cagccccgag ccgcccagca ctgcaggaga agcagcctga gaaggaggag
1861 gaggaggagg cgggagagag tgtggaggac attttctcag aggtcgtggg ccggaagcgg
1921 cagcggtcag gacccaacag gggagccaag aggcggaggg aggaggcccg gcagcgggac
1981 caggaattct acatccccta ccggcccaag gactttgaca gcgagcgggg cctgagcatc
2041 agcggggaag ggggagcctt tgagcagcag gcagctggcg ctgtcctgga cttgatgggg
2101 gatgaagccc agaacctgac gaggggccgg cagcagctca agtgggaccg taagaagaag
2161 cggtttgtgg gacagtcagg acaggaagac aagaagaaga ttaagacaga gagcggccgc
2221 tacatcagca gctcctacaa gcgagacctc tatcagaagt ggaaacagaa acagaaaatt
2281 gatgatcgtg actcggacga agaaggggca tctgaccggc gaggcccaga gcgaagaggt
2341 gggaagcgag accgtggcca aggtgcatcc cggccccacg ccccaggcac ccctgcaggc
2401 cgagtccgcc cggaactcaa gaccaagcag cagatcctga agcagcggcg ccgggcccag
2461 aagctgcact tcctgcagcg tggtggcctc aagcagctct ctgcccgcaa ccgccgccgc
2521 gtccaggagc tgcagcaggg cgccttcggc cggggtgccc gctccaagaa gggcaagatg
2581 cggaagagga tgtgaggacc aggacccagc cccgtggctc cttgattggc cttagggtgg
2641 gcatcagcag acgttcccgt gcaccactgt gtgcctggcc ctgtgctggg cactgggggc
2701 actccctgca ggagccatca tctgtgaaaa ggagcactgt atggccacag aagggcagca
2761 gctgcgtcag cctaagacag agacatttga acagggcctt gaagggtgtg caggagttcg
2821 ccagcaaagc caggcaggcc aagacttgag ttggcaactc agctgctgct gcttccatgt
2881 gttctgggtt cagaggtcat ggctgcaccg gtcagagccc tgagtgcctc agggtttggc
2941 aatggaattt ttaatgtaat aaatctttat tgagcactgc tggtggccag gagtgcggtc
3001 tacttgggga actggaatgg agagacccag gtactaaaat cccagctaac gtggcagagg
3061 agttgcgggt ctcctgaggg tgagttctgc tgccttgtcc atttagcgat gaggaaagtg
3121 aagctcagag cacaaaccag gtgccagagg cgggagttgg tcccccttcc tcccactgga
3181 catggttgca gctgggagtg ggctggggga ggggaacagg atgcccagcc cagggggcaa
3241 ggacacagct gctcccctct ggctatgaag aggttaacgc ggcccctcca cacctggagg
3301 tcagaacctg gcctgtcctc tgtcttcttg ccacccaccc cctgtttgag gttctgagaa
3361 ggtcaagggc agccccagca gctggattct caggctgggc ccctcacctg gcagagtcca
3421 tagtggaggg ggccttggtg atctctcatc tagcatggac cctgttctga gacctgacaa
3481 agagtttttt ttcatgcccc aaccaccctg gcagggaggg cctggtctga tctcatttta
3541 gaggcagttg ccccacacat agccccttga ccttcccatc acctcctcat cagggcctgc
3601 atttatggag tgcttgctat gtgcccctca tggcaggccc acagcactct gaacaggcac
3661 agccctccca tcttcccaat gaggaaacgg attcaggaag agccactcag tccacacccc
3721 attggaaatg tgggccctcc tatctcaggg tctctcaggg gttccctctc ccgctgctca
3781 cctgtgtcag ggctaggagg caggggctgc aggctcagcc tgacccaggc cggccagcat
3841 ggcagagagg tcctgcatga acagcttcac ctgggggggc ccagcacgaa gtcacatccc
3901 agccccagag tcactgtcca gcccccaccc ctcaacacgc gggggaggcc gaaaggtagg
3961 gcggggactg gagatcccct cattaaaaga acagtgatga tggtggttcc cagaggtggt
4021 gactgagatc ctaaaccgtt ctgggttttg aaagcctcag gccaaccttc ccaactgctg
4081 cgtgagcaga caccttcaca gcttcctcgc tgctgtcacc tgcactatcc aattagtatt
4141 ttcatttaca tcaatcagct ttattttctt gtaactggat cagtcatatt cattggtttg
4201 tgacctactc ttatctccgt gggtggctct ccttttgttt taattaactt ctttatgaat
4261 atgaacttaa taaataccat ggatccattg taaaaactaa aaaaaaaaaa aaaaaaaaaa
4321 aa
//