LOCUS BC005155 2977 bp mRNA linear HUM 04-NOV-2003 DEFINITION Homo sapiens Rho guanine nucleotide exchange factor (GEF) 1, mRNA (cDNA clone IMAGE:3530329), partial cds. ACCESSION BC005155 VERSION BC005155.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2977) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2977) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Oct 31, 2003 this sequence version replaced BC005155.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 11 Row: a Column: 21. FEATURES Location/Qualifiers source 1..2977 /db_xref="H-InvDB:HIT000032253" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3530329" /tissue_type="Muscle, rhabdomyosarcoma" /clone_lib="NIH_MGC_17" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..2977 /gene="ARHGEF1" /gene_synonym="GEF1" /gene_synonym="LBCL2" /gene_synonym="P115-RHOGEF" /gene_synonym="SUB1.5" /db_xref="GeneID:9138" /db_xref="MIM:601855" CDS <1..2586 /gene="ARHGEF1" /gene_synonym="GEF1" /gene_synonym="LBCL2" /gene_synonym="P115-RHOGEF" /gene_synonym="SUB1.5" /codon_start=1 /product="ARHGEF1 protein" /protein_id="AAH05155.2" /db_xref="GeneID:9138" /db_xref="MIM:601855" /translation="VKRRPAHLMALLQHVALQFEPGPLLCCLHADMLGSLGPKEAKKA FLDFYHSFLEKTAVLRVPVPPNVAFELDRTRADLISEDVQRRFVQEVVQSQQVAVGRQ LEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEARERHVAERLLMHLEEMQHTISTD EEKSAAVVNAIGLYMRHLGVRTKSGDKKSGRNFFRKKVMGNRRSDEPAKTKKGLSSIL DAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNIGAPGQDTPGVSLH PLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGR SGLELEPEEPPGWRELVPPDTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFF QPMAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFD GAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIP TEMQRLTKYPLLLQSIGQNTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKD YQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLL LLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQ EAQIYELVAQTVSERKNWCALITETAGSLKVPAPASRPKPRPSPSSTREPLLSSSENG NGGRETSPADARTERILSDLLPFCRPGPEGQLAATALRKVLSLKQLLFPAEEDNGAGP PRDGDGVPGGGPLSPARTQEIQENLLSLEETMKQLEELEEEFCRLRPLLSQLGGNSVP QPGCT" misc_feature 1105..1659 /gene="ARHGEF1" /gene_synonym="GEF1" /gene_synonym="LBCL2" /gene_synonym="P115-RHOGEF" /gene_synonym="SUB1.5" /note="RhoGEF; Region: Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases" /db_xref="CDD:smart00325" BASE COUNT 618 a 924 c 941 g 494 t ORIGIN 1 gtgaagcggc gcccagccca cctcatggcc ctcctgcagc acgtggccct gcagtttgag 61 ccaggacccc tgctttgctg tctgcatgcc gacatgctgg gctcactggg ccccaaggag 121 gccaagaagg ccttcctgga cttctaccac agcttcctgg agaagacagc ggttctccgg 181 gtgccggtcc ctcccaacgt cgcctttgaa cttgaccgca ctagggctga cctcatctcc 241 gaggatgtcc agcggcggtt cgtgcaggag gtggtgcaaa gccagcaggt agccgtgggc 301 cggcagctgg aggacttccg ttccaagcgg ctcatgggca tgacgccctg ggagcaggag 361 ctggcccagc tggaggcttg ggttgggcgg gaccgagcca gctacgaggc ccgggagcgg 421 cacgtggcgg agcggctgct catgcacctg gaggagatgc aacataccat ctctaccgac 481 gaagaaaaga gtgctgccgt ggtcaacgcc attggcctgt acatgcgcca ccttggggtg 541 cggaccaaga gtggagacaa gaagtcgggg aggaacttct tccggaaaaa ggtgatgggg 601 aaccggcggt cggacgagcc tgccaagacc aagaaggggc tgagcagcat cctggatgcc 661 gcccgctgga accggggaga gccccaggtt ccagattttc gacacctcaa agcagaggtt 721 gatgccgaga agccaggtgc tacagaccgg aagggaggcg tggggatgcc ctctcgggac 781 cggaatatcg gggctcctgg gcaggacacc cctggagtct ctctgcaccc tctgtccctg 841 gacagcccag accgggaacc aggtgctgac gcccccctgg agctggggga ctcatccccg 901 cagggcccaa tgagcctgga gtccttggcg cccccagaga gtaccgacga gggggccgaa 961 accgagagcc ccgagcctgg agatgagggg gagccggggc ggtcgggact ggagcttgaa 1021 ccagaagagc ctcccggctg gcgggaactc gtccccccag acaccctgca cagcctgccc 1081 aagagccagg tgaagcggca ggaggtcatc agcgagctgc tggtgacaga ggcggcccac 1141 gtgcgcatgc tgcgggtgct gcacgacctc ttcttccagc ccatggcaga atgcctgttc 1201 ttccccttgg aggagctgca gaacatcttc cccagcctgg acgagctcat cgaggtgcat 1261 tccctgttcc tcgatcgcct gatgaagcgg aggcaggaga gtggctacct catcgaggag 1321 atcggagacg tgctgctggc ccggtttgat ggtgctgagg gctcctggtt ccagaaaatc 1381 tcctcccgct tctgcagccg ccagtcattt gccttagagc agctcaaagc caagcaacgc 1441 aaggaccctc ggttctgtgc cttcgtgcag gaagctgaga gccgcccgcg gtgccgccgc 1501 ctgcagctga aggacatgat ccccacggag atgcagcggc tgaccaagta ccccctgctc 1561 ctgcagagca tcgggcagaa cacagaagag cccacagaac gggagaaagt ggagctggca 1621 gccgagtgct gccgggaaat tctacaccac gtcaaccaag ccgtgcgtga catggaggac 1681 ctgctgaggc tcaaggacta tcagcggcgc ctggacttgt cccaccttcg gcagagcagc 1741 gaccctatgc tgagcgagtt caagaacctg gacatcacca agaagaaatt ggtccacgag 1801 ggcccactga cgtggcgggt gactaaggac aaggcagtgg aggtgcatgt gctgctgctg 1861 gacgacctgc tgctgctgct ccagcgccag gacgagcggc tgctgctcaa gtcccatagc 1921 cggacactga cgcccacgcc cgatggcaag accatgctgc ggcccgtgct gcggctcacc 1981 tccgccatga cccgcgaggt ggccaccgat cacaaagcct tctacgtcct ttttacctgg 2041 gaccaggagg cccagatata cgagctggtg gcacagactg tgtcggagcg gaaaaactgg 2101 tgtgctctca tcactgagac tgccggatcc ctgaaagtcc ctgcccctgc ctctcgccct 2161 aagccccggc ccagcccgag cagcacccga gaacccctcc tcagcagctc tgagaacggc 2221 aatggtggcc gagagacgtc tccagctgat gcccggaccg agagaatcct cagtgacctc 2281 ctgcccttct gcagaccagg ccccgagggc cagctcgctg ccacggccct tcggaaagtg 2341 ctgtccctga agcagcttct gtttccggcg gaggaagaca atggggcggg gcctcctcga 2401 gatggggatg gggtcccagg gggcggcccc ctgagcccag cacggaccca ggaaatccag 2461 gagaacctgc tcagcttgga ggagaccatg aagcagctgg aggagttgga ggaggaattt 2521 tgccgcctga gacccctcct gtctcagctt ggggggaact ctgtccccca gcctggctgc 2581 acttgaggtt cccgcccagg aaggcctttt gcaagaagga gaggaatggg ggagaggacg 2641 tgagggacca cccccaccca cacagctgcc gcagcatctc acaccccgag ggcctgagga 2701 gagggagctg tgggccacgc ctgggagggg cccagctggg gttactggcc ccgcatgagc 2761 ctcggccatc tctccctcct gccctctgct tgggggactc agggctccat tctggagggc 2821 accacggtga cccgggccat ctcagtattg cctgtggggg ccacccctcc acccccaccc 2881 ccaagtgcct tcgctctgtt tttataccct gaattggagg tttatttttt aatatatatt 2941 atctaagaag aaaaaaaaaa aaaaaaaaaa aaaaaaa //