LOCUS BC005155 2977 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens Rho guanine nucleotide exchange factor (GEF) 1, mRNA
(cDNA clone IMAGE:3530329), partial cds.
ACCESSION BC005155
VERSION BC005155.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2977)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2977)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 31, 2003 this sequence version replaced BC005155.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: a Column: 21.
FEATURES Location/Qualifiers
source 1..2977
/db_xref="H-InvDB:HIT000032253"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3530329"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2977
/gene="ARHGEF1"
/gene_synonym="GEF1"
/gene_synonym="LBCL2"
/gene_synonym="P115-RHOGEF"
/gene_synonym="SUB1.5"
/db_xref="GeneID:9138"
/db_xref="MIM:601855"
CDS <1..2586
/gene="ARHGEF1"
/gene_synonym="GEF1"
/gene_synonym="LBCL2"
/gene_synonym="P115-RHOGEF"
/gene_synonym="SUB1.5"
/codon_start=1
/product="ARHGEF1 protein"
/protein_id="AAH05155.2"
/db_xref="GeneID:9138"
/db_xref="MIM:601855"
/translation="VKRRPAHLMALLQHVALQFEPGPLLCCLHADMLGSLGPKEAKKA
FLDFYHSFLEKTAVLRVPVPPNVAFELDRTRADLISEDVQRRFVQEVVQSQQVAVGRQ
LEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEARERHVAERLLMHLEEMQHTISTD
EEKSAAVVNAIGLYMRHLGVRTKSGDKKSGRNFFRKKVMGNRRSDEPAKTKKGLSSIL
DAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNIGAPGQDTPGVSLH
PLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGR
SGLELEPEEPPGWRELVPPDTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFF
QPMAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFD
GAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIP
TEMQRLTKYPLLLQSIGQNTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKD
YQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLL
LLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQ
EAQIYELVAQTVSERKNWCALITETAGSLKVPAPASRPKPRPSPSSTREPLLSSSENG
NGGRETSPADARTERILSDLLPFCRPGPEGQLAATALRKVLSLKQLLFPAEEDNGAGP
PRDGDGVPGGGPLSPARTQEIQENLLSLEETMKQLEELEEEFCRLRPLLSQLGGNSVP
QPGCT"
misc_feature 1105..1659
/gene="ARHGEF1"
/gene_synonym="GEF1"
/gene_synonym="LBCL2"
/gene_synonym="P115-RHOGEF"
/gene_synonym="SUB1.5"
/note="RhoGEF; Region: Guanine nucleotide exchange factor
for Rho/Rac/Cdc42-like GTPases"
/db_xref="CDD:smart00325"
BASE COUNT 618 a 924 c 941 g 494 t
ORIGIN
1 gtgaagcggc gcccagccca cctcatggcc ctcctgcagc acgtggccct gcagtttgag
61 ccaggacccc tgctttgctg tctgcatgcc gacatgctgg gctcactggg ccccaaggag
121 gccaagaagg ccttcctgga cttctaccac agcttcctgg agaagacagc ggttctccgg
181 gtgccggtcc ctcccaacgt cgcctttgaa cttgaccgca ctagggctga cctcatctcc
241 gaggatgtcc agcggcggtt cgtgcaggag gtggtgcaaa gccagcaggt agccgtgggc
301 cggcagctgg aggacttccg ttccaagcgg ctcatgggca tgacgccctg ggagcaggag
361 ctggcccagc tggaggcttg ggttgggcgg gaccgagcca gctacgaggc ccgggagcgg
421 cacgtggcgg agcggctgct catgcacctg gaggagatgc aacataccat ctctaccgac
481 gaagaaaaga gtgctgccgt ggtcaacgcc attggcctgt acatgcgcca ccttggggtg
541 cggaccaaga gtggagacaa gaagtcgggg aggaacttct tccggaaaaa ggtgatgggg
601 aaccggcggt cggacgagcc tgccaagacc aagaaggggc tgagcagcat cctggatgcc
661 gcccgctgga accggggaga gccccaggtt ccagattttc gacacctcaa agcagaggtt
721 gatgccgaga agccaggtgc tacagaccgg aagggaggcg tggggatgcc ctctcgggac
781 cggaatatcg gggctcctgg gcaggacacc cctggagtct ctctgcaccc tctgtccctg
841 gacagcccag accgggaacc aggtgctgac gcccccctgg agctggggga ctcatccccg
901 cagggcccaa tgagcctgga gtccttggcg cccccagaga gtaccgacga gggggccgaa
961 accgagagcc ccgagcctgg agatgagggg gagccggggc ggtcgggact ggagcttgaa
1021 ccagaagagc ctcccggctg gcgggaactc gtccccccag acaccctgca cagcctgccc
1081 aagagccagg tgaagcggca ggaggtcatc agcgagctgc tggtgacaga ggcggcccac
1141 gtgcgcatgc tgcgggtgct gcacgacctc ttcttccagc ccatggcaga atgcctgttc
1201 ttccccttgg aggagctgca gaacatcttc cccagcctgg acgagctcat cgaggtgcat
1261 tccctgttcc tcgatcgcct gatgaagcgg aggcaggaga gtggctacct catcgaggag
1321 atcggagacg tgctgctggc ccggtttgat ggtgctgagg gctcctggtt ccagaaaatc
1381 tcctcccgct tctgcagccg ccagtcattt gccttagagc agctcaaagc caagcaacgc
1441 aaggaccctc ggttctgtgc cttcgtgcag gaagctgaga gccgcccgcg gtgccgccgc
1501 ctgcagctga aggacatgat ccccacggag atgcagcggc tgaccaagta ccccctgctc
1561 ctgcagagca tcgggcagaa cacagaagag cccacagaac gggagaaagt ggagctggca
1621 gccgagtgct gccgggaaat tctacaccac gtcaaccaag ccgtgcgtga catggaggac
1681 ctgctgaggc tcaaggacta tcagcggcgc ctggacttgt cccaccttcg gcagagcagc
1741 gaccctatgc tgagcgagtt caagaacctg gacatcacca agaagaaatt ggtccacgag
1801 ggcccactga cgtggcgggt gactaaggac aaggcagtgg aggtgcatgt gctgctgctg
1861 gacgacctgc tgctgctgct ccagcgccag gacgagcggc tgctgctcaa gtcccatagc
1921 cggacactga cgcccacgcc cgatggcaag accatgctgc ggcccgtgct gcggctcacc
1981 tccgccatga cccgcgaggt ggccaccgat cacaaagcct tctacgtcct ttttacctgg
2041 gaccaggagg cccagatata cgagctggtg gcacagactg tgtcggagcg gaaaaactgg
2101 tgtgctctca tcactgagac tgccggatcc ctgaaagtcc ctgcccctgc ctctcgccct
2161 aagccccggc ccagcccgag cagcacccga gaacccctcc tcagcagctc tgagaacggc
2221 aatggtggcc gagagacgtc tccagctgat gcccggaccg agagaatcct cagtgacctc
2281 ctgcccttct gcagaccagg ccccgagggc cagctcgctg ccacggccct tcggaaagtg
2341 ctgtccctga agcagcttct gtttccggcg gaggaagaca atggggcggg gcctcctcga
2401 gatggggatg gggtcccagg gggcggcccc ctgagcccag cacggaccca ggaaatccag
2461 gagaacctgc tcagcttgga ggagaccatg aagcagctgg aggagttgga ggaggaattt
2521 tgccgcctga gacccctcct gtctcagctt ggggggaact ctgtccccca gcctggctgc
2581 acttgaggtt cccgcccagg aaggcctttt gcaagaagga gaggaatggg ggagaggacg
2641 tgagggacca cccccaccca cacagctgcc gcagcatctc acaccccgag ggcctgagga
2701 gagggagctg tgggccacgc ctgggagggg cccagctggg gttactggcc ccgcatgagc
2761 ctcggccatc tctccctcct gccctctgct tgggggactc agggctccat tctggagggc
2821 accacggtga cccgggccat ctcagtattg cctgtggggg ccacccctcc acccccaccc
2881 ccaagtgcct tcgctctgtt tttataccct gaattggagg tttatttttt aatatatatt
2941 atctaagaag aaaaaaaaaa aaaaaaaaaa aaaaaaa
//