LOCUS BC004408 1542 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens high-mobility group 20B, mRNA (cDNA clone MGC:11001 IMAGE:3638942), complete cds. ACCESSION BC004408 VERSION BC004408.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1542) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1542) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (12-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 13 Row: j Column: 10. FEATURES Location/Qualifiers source 1..1542 /db_xref="H-InvDB:HIT000031922" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:11001 IMAGE:3638942" /tissue_type="Pancreas, adenocarcinoma" /clone_lib="NIH_MGC_39" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1542 /gene="HMG20B" /gene_synonym="BRAF25" /gene_synonym="BRAF35" /gene_synonym="HMGX2" /gene_synonym="PP7706" /gene_synonym="pp8857" /gene_synonym="SMARCE1r" /gene_synonym="SOXL" /db_xref="GeneID:10362" /db_xref="HGNC:HGNC:5002" /db_xref="MIM:605535" CDS 7..960 /gene="HMG20B" /gene_synonym="BRAF25" /gene_synonym="BRAF35" /gene_synonym="HMGX2" /gene_synonym="PP7706" /gene_synonym="pp8857" /gene_synonym="SMARCE1r" /gene_synonym="SOXL" /codon_start=1 /product="high-mobility group 20B" /protein_id="AAH04408.2" /db_xref="GeneID:10362" /db_xref="HGNC:HGNC:5002" /db_xref="MIM:605535" /translation="MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKG SHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITK MLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDS SSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNA VLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETPT LGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL" BASE COUNT 351 a 479 c 487 g 225 t ORIGIN 1 gcggccatgt cccacggccc caagcagccc ggcgcggccg ccgcgccggc gggcggcaag 61 gctccgggcc agcatggggg cttcgtggtg actgtcaagc aagagcgcgg cgagggtcca 121 cgcgcgggcg agaaggggtc ccacgaggag gagccggtga agaaacgcgg ctggcccaag 181 ggcaagaagc ggaagaagat tctgccgaat gggcccaagg caccggtcac gggctacgtg 241 cgcttcctga acgagcggcg cgagcagatc cgcacgcgcc acccggatct gccctttccc 301 gagatcacca agatgctggg cgccgagtgg agcaagctgc agccaacgga aaagcagcgg 361 tacctggatg aggccgagag agagaagcag cagtacatga aggagctgcg ggcgtaccag 421 cagtctgaag cctataagat gtgcacggag aagatccagg agaagaagat caagaaagaa 481 gactcgagct ctgggctcat gaacactctc ctgaatggac acaagggtgg ggactgcgat 541 ggcttctcca ccttcgatgt tcccatcttc actgaagagt tcttggacca aaacaaagcg 601 cgtgaggcgg agcttcggcg cttgcggaag atgaatgtgg ccttcgagga gcagaacgcg 661 gtactgcaga ggcacacgca gagcatgagc agcgcgcgcg agcgtctgga gcaggagctg 721 gcgctggagg agcggaggac gctggcgctg cagcagcagc tccaggccgt gcgccaggcg 781 ctcaccgcca gcttcgcctc actgccagtg ccgggcacgg gcgaaacgcc cacgctgggc 841 actctggact tctacatggc ccggcttcac ggagccatcg agcgcgaccc cgcccagcac 901 gagaagctca tcgtccgcat caaggaaatc ctggcccagg tcgccagcga gcacctgtga 961 ggagtgggcg ggcccacgat gcagaggaga agctgtgggc gcggccctgc cacaccccac 1021 cccgtggacg agaggctggg ggtccaccct ttggggcctg gtcccatcct gcaccttggg 1081 ggctccagcc cccctaaaat taaatttctg cagcatccct ttagctttca atctccccag 1141 ccccctgaac ccggaaaaag cactcgctgc gcgatacacc cagaagaacc tcacagccga 1201 gggtgcccct cctcggagga cagccacgcg ctacactggc tctccgggcc acccccagga 1261 cacagggcag acgaaaccca cccccagcac acggcaggac cccccaaatt actcactacg 1321 gggggctgtg ccataggcca cacaggaagc tgccttgtgg ggacttacct ggggtgtccc 1381 ccgcatgcct gtaccccaga tgggtggggg ccggctttgc ccatcctgct ctcctccagc 1441 tgagggaccc tggtgggggt ggctccttct cactgctgga tccggacttt ttaaataaaa 1501 acaagtaaaa tttgtgtttt aaaaaaaaaa aaaaaaaaaa aa //