LOCUS BC004408 1542 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens high-mobility group 20B, mRNA (cDNA clone MGC:11001
IMAGE:3638942), complete cds.
ACCESSION BC004408
VERSION BC004408.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1542)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1542)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: j Column: 10.
FEATURES Location/Qualifiers
source 1..1542
/db_xref="H-InvDB:HIT000031922"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:11001 IMAGE:3638942"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1542
/gene="HMG20B"
/gene_synonym="BRAF25"
/gene_synonym="BRAF35"
/gene_synonym="HMGX2"
/gene_synonym="PP7706"
/gene_synonym="pp8857"
/gene_synonym="SMARCE1r"
/gene_synonym="SOXL"
/db_xref="GeneID:10362"
/db_xref="HGNC:HGNC:5002"
/db_xref="MIM:605535"
CDS 7..960
/gene="HMG20B"
/gene_synonym="BRAF25"
/gene_synonym="BRAF35"
/gene_synonym="HMGX2"
/gene_synonym="PP7706"
/gene_synonym="pp8857"
/gene_synonym="SMARCE1r"
/gene_synonym="SOXL"
/codon_start=1
/product="high-mobility group 20B"
/protein_id="AAH04408.2"
/db_xref="GeneID:10362"
/db_xref="HGNC:HGNC:5002"
/db_xref="MIM:605535"
/translation="MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKG
SHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITK
MLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDS
SSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNA
VLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETPT
LGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL"
BASE COUNT 351 a 479 c 487 g 225 t
ORIGIN
1 gcggccatgt cccacggccc caagcagccc ggcgcggccg ccgcgccggc gggcggcaag
61 gctccgggcc agcatggggg cttcgtggtg actgtcaagc aagagcgcgg cgagggtcca
121 cgcgcgggcg agaaggggtc ccacgaggag gagccggtga agaaacgcgg ctggcccaag
181 ggcaagaagc ggaagaagat tctgccgaat gggcccaagg caccggtcac gggctacgtg
241 cgcttcctga acgagcggcg cgagcagatc cgcacgcgcc acccggatct gccctttccc
301 gagatcacca agatgctggg cgccgagtgg agcaagctgc agccaacgga aaagcagcgg
361 tacctggatg aggccgagag agagaagcag cagtacatga aggagctgcg ggcgtaccag
421 cagtctgaag cctataagat gtgcacggag aagatccagg agaagaagat caagaaagaa
481 gactcgagct ctgggctcat gaacactctc ctgaatggac acaagggtgg ggactgcgat
541 ggcttctcca ccttcgatgt tcccatcttc actgaagagt tcttggacca aaacaaagcg
601 cgtgaggcgg agcttcggcg cttgcggaag atgaatgtgg ccttcgagga gcagaacgcg
661 gtactgcaga ggcacacgca gagcatgagc agcgcgcgcg agcgtctgga gcaggagctg
721 gcgctggagg agcggaggac gctggcgctg cagcagcagc tccaggccgt gcgccaggcg
781 ctcaccgcca gcttcgcctc actgccagtg ccgggcacgg gcgaaacgcc cacgctgggc
841 actctggact tctacatggc ccggcttcac ggagccatcg agcgcgaccc cgcccagcac
901 gagaagctca tcgtccgcat caaggaaatc ctggcccagg tcgccagcga gcacctgtga
961 ggagtgggcg ggcccacgat gcagaggaga agctgtgggc gcggccctgc cacaccccac
1021 cccgtggacg agaggctggg ggtccaccct ttggggcctg gtcccatcct gcaccttggg
1081 ggctccagcc cccctaaaat taaatttctg cagcatccct ttagctttca atctccccag
1141 ccccctgaac ccggaaaaag cactcgctgc gcgatacacc cagaagaacc tcacagccga
1201 gggtgcccct cctcggagga cagccacgcg ctacactggc tctccgggcc acccccagga
1261 cacagggcag acgaaaccca cccccagcac acggcaggac cccccaaatt actcactacg
1321 gggggctgtg ccataggcca cacaggaagc tgccttgtgg ggacttacct ggggtgtccc
1381 ccgcatgcct gtaccccaga tgggtggggg ccggctttgc ccatcctgct ctcctccagc
1441 tgagggaccc tggtgggggt ggctccttct cactgctgga tccggacttt ttaaataaaa
1501 acaagtaaaa tttgtgtttt aaaaaaaaaa aaaaaaaaaa aa
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