LOCUS       BC004201                2124 bp    mRNA    linear   HUM 15-JUL-2006
DEFINITION  Homo sapiens interferon regulatory factor 5, mRNA (cDNA clone
            MGC:3698 IMAGE:2963923), complete cds.
ACCESSION   BC004201
VERSION     BC004201.2
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2124)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     On Oct 31, 2003 this sequence version replaced BC004201.1.
            Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: DCTD/DTP
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Institute for Systems Biology
            http://www.systemsbiology.org
            contact: amadan@systemsbiology.org
            Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
            Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 10 Row: j Column: 17
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 38683858.
FEATURES             Location/Qualifiers
     source          1..2124
                     /db_xref="H-InvDB:HIT000031776"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:3698 IMAGE:2963923"
                     /tissue_type="Kidney, renal cell adenocarcinoma"
                     /clone_lib="NIH_MGC_14"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
     gene            1..2124
                     /gene="IRF5"
                     /db_xref="GeneID:3663"
                     /db_xref="HGNC:HGNC:6120"
                     /db_xref="MIM:607218"
     CDS             41..1537
                     /gene="IRF5"
                     /codon_start=1
                     /product="interferon regulatory factor 5"
                     /protein_id="AAH04201.1"
                     /db_xref="GeneID:3663"
                     /db_xref="HGNC:HGNC:6120"
                     /db_xref="MIM:607218"
                     /translation="MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFC
                     IPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRL
                     IYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLT
                     EDVKWPPTLQPPTLRPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVL
                     EPGPLPASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFY
                     SQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDL
                     YAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPP
                     FEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQISNPDL
                     KDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPWPMHPAGMQ"
BASE COUNT          454 a          678 c          581 g          411 t
ORIGIN      
        1 gtccagctgc gcctggaaag cgagctcgga cccctctgcc atgaaccagt ccatcccagt
       61 ggctcccacc ccaccccgcc gcgtgcggct gaagccctgg ctggtggccc aggtgaacag
      121 ctgccagtac ccagggcttc aatgggtcaa cggggaaaag aaattattct gcatcccctg
      181 gaggcatgcc acaaggcatg gtcccagcca ggacggagat aacaccatct tcaaggcctg
      241 ggccaaggag acagggaaat acaccgaagg cgtggatgaa gccgatccgg ccaagtggaa
      301 ggccaacctg cgctgtgccc ttaacaagag ccgggacttc cgcctcatct acgacgggcc
      361 ccgggacatg ccacctcagc cctacaagat ctacgaggtc tgctccaatg gccctgctcc
      421 cacagactcc cagccccctg aggattactc ttttggtgca ggagaggagg aggaagaaga
      481 ggaagagctg cagaggatgt tgccaagcct gagcctcaca gaggatgtca agtggccgcc
      541 cactctgcag ccgcccactc tgcggccgcc tactctgcag ccgcccactc tgcagccgcc
      601 cgtggtgctg ggtccccctg ctccagaccc cagccccctg gctcctcccc ctggcaaccc
      661 tgctggcttc agggagcttc tctctgaggt cctggagcct gggcccctgc ctgccagcct
      721 gccccctgca ggcgaacagc tcctgccaga cctgctgatc agcccccaca tgctgcctct
      781 gaccgacctg gagatcaagt ttcagtaccg ggggcggcca ccccgggccc tcaccatcag
      841 caacccccat ggctgccggc tcttctacag ccagctggag gccacccagg agcaggtgga
      901 actcttcggc cccataagcc tggagcaagt gcgcttcccc agccctgagg acatccccag
      961 tgacaagcag cgcttctaca cgaaccagct gctggatgtc ctggaccgcg ggctcatcct
     1021 ccagctacag ggccaggacc tttatgccat ccgcctgtgt cagtgcaagg tgttctggag
     1081 cgggccttgt gcctcagccc atgactcatg ccccaacccc atccagcggg aggtcaagac
     1141 caagcttttc agcctggagc attttctcaa tgagctcatc ctgttccaaa agggccagac
     1201 caacacccca ccacccttcg agatcttctt ctgctttggg gaagaatggc ctgaccgcaa
     1261 accccgagag aagaagctca ttactgtaca ggtggtgcct gtagcagctc gactgctgct
     1321 ggagatgttc tcaggggagc tatcttggtc agctgatagt atccggctac agatctcaaa
     1381 cccagacctc aaagaccgca tggtggagca attcaaggag ctccatcaca tctggcagtc
     1441 ccagcagcgg ttgcagcctg tggcccaggc ccctcctgga gcaggccttg gtgttggcca
     1501 ggggccctgg cctatgcacc cagctggcat gcaataacaa ggctgcagac ggtgactggc
     1561 cctggcttcc tgggtggcgg tgcggactga tgtggagatg tgacagcccc gatgagcacc
     1621 tggctggctg cagggtccta cctctgggtt tcctggaagt ggatctgggc caagaaggag
     1681 agggagaaag gcccgagccc ctgccttccc gggcctttct ctcctgggct gtctctggtc
     1741 tggtcagcct ggctctcggg aaattcagcc atgagcaggg aaagaactct cccaaccctg
     1801 gggcctagct gtataggagg aattgcctaa gggtggccca ctcttgtgat tgccccattt
     1861 cctctggcaa caaaagccag agtgttgtgg gccaagtccc cccacagggc ctctgcaggg
     1921 catggccctg atttccctgg tttgagactc acttcctcat ctccctgtcc tctgagataa
     1981 tatgagtgag cacttaggta tcatatcaga tgctcaaggc tggcagctac ccccttcttg
     2041 agagtccaag aacctggagc agaaataatt tttatgtatt tttggattaa taaatgttaa
     2101 aaacagaaaa aaaaaaaaaa aaaa
//