LOCUS BC004201 2124 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens interferon regulatory factor 5, mRNA (cDNA clone MGC:3698 IMAGE:2963923), complete cds. ACCESSION BC004201 VERSION BC004201.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2124) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2124) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Oct 31, 2003 this sequence version replaced BC004201.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 10 Row: j Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 38683858. FEATURES Location/Qualifiers source 1..2124 /db_xref="H-InvDB:HIT000031776" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:3698 IMAGE:2963923" /tissue_type="Kidney, renal cell adenocarcinoma" /clone_lib="NIH_MGC_14" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2124 /gene="IRF5" /db_xref="GeneID:3663" /db_xref="HGNC:HGNC:6120" /db_xref="MIM:607218" CDS 41..1537 /gene="IRF5" /codon_start=1 /product="interferon regulatory factor 5" /protein_id="AAH04201.1" /db_xref="GeneID:3663" /db_xref="HGNC:HGNC:6120" /db_xref="MIM:607218" /translation="MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFC IPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRL IYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLT EDVKWPPTLQPPTLRPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVL EPGPLPASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFY SQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDL YAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPP FEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQISNPDL KDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPWPMHPAGMQ" BASE COUNT 454 a 678 c 581 g 411 t ORIGIN 1 gtccagctgc gcctggaaag cgagctcgga cccctctgcc atgaaccagt ccatcccagt 61 ggctcccacc ccaccccgcc gcgtgcggct gaagccctgg ctggtggccc aggtgaacag 121 ctgccagtac ccagggcttc aatgggtcaa cggggaaaag aaattattct gcatcccctg 181 gaggcatgcc acaaggcatg gtcccagcca ggacggagat aacaccatct tcaaggcctg 241 ggccaaggag acagggaaat acaccgaagg cgtggatgaa gccgatccgg ccaagtggaa 301 ggccaacctg cgctgtgccc ttaacaagag ccgggacttc cgcctcatct acgacgggcc 361 ccgggacatg ccacctcagc cctacaagat ctacgaggtc tgctccaatg gccctgctcc 421 cacagactcc cagccccctg aggattactc ttttggtgca ggagaggagg aggaagaaga 481 ggaagagctg cagaggatgt tgccaagcct gagcctcaca gaggatgtca agtggccgcc 541 cactctgcag ccgcccactc tgcggccgcc tactctgcag ccgcccactc tgcagccgcc 601 cgtggtgctg ggtccccctg ctccagaccc cagccccctg gctcctcccc ctggcaaccc 661 tgctggcttc agggagcttc tctctgaggt cctggagcct gggcccctgc ctgccagcct 721 gccccctgca ggcgaacagc tcctgccaga cctgctgatc agcccccaca tgctgcctct 781 gaccgacctg gagatcaagt ttcagtaccg ggggcggcca ccccgggccc tcaccatcag 841 caacccccat ggctgccggc tcttctacag ccagctggag gccacccagg agcaggtgga 901 actcttcggc cccataagcc tggagcaagt gcgcttcccc agccctgagg acatccccag 961 tgacaagcag cgcttctaca cgaaccagct gctggatgtc ctggaccgcg ggctcatcct 1021 ccagctacag ggccaggacc tttatgccat ccgcctgtgt cagtgcaagg tgttctggag 1081 cgggccttgt gcctcagccc atgactcatg ccccaacccc atccagcggg aggtcaagac 1141 caagcttttc agcctggagc attttctcaa tgagctcatc ctgttccaaa agggccagac 1201 caacacccca ccacccttcg agatcttctt ctgctttggg gaagaatggc ctgaccgcaa 1261 accccgagag aagaagctca ttactgtaca ggtggtgcct gtagcagctc gactgctgct 1321 ggagatgttc tcaggggagc tatcttggtc agctgatagt atccggctac agatctcaaa 1381 cccagacctc aaagaccgca tggtggagca attcaaggag ctccatcaca tctggcagtc 1441 ccagcagcgg ttgcagcctg tggcccaggc ccctcctgga gcaggccttg gtgttggcca 1501 ggggccctgg cctatgcacc cagctggcat gcaataacaa ggctgcagac ggtgactggc 1561 cctggcttcc tgggtggcgg tgcggactga tgtggagatg tgacagcccc gatgagcacc 1621 tggctggctg cagggtccta cctctgggtt tcctggaagt ggatctgggc caagaaggag 1681 agggagaaag gcccgagccc ctgccttccc gggcctttct ctcctgggct gtctctggtc 1741 tggtcagcct ggctctcggg aaattcagcc atgagcaggg aaagaactct cccaaccctg 1801 gggcctagct gtataggagg aattgcctaa gggtggccca ctcttgtgat tgccccattt 1861 cctctggcaa caaaagccag agtgttgtgg gccaagtccc cccacagggc ctctgcaggg 1921 catggccctg atttccctgg tttgagactc acttcctcat ctccctgtcc tctgagataa 1981 tatgagtgag cacttaggta tcatatcaga tgctcaaggc tggcagctac ccccttcttg 2041 agagtccaag aacctggagc agaaataatt tttatgtatt tttggattaa taaatgttaa 2101 aaacagaaaa aaaaaaaaaa aaaa //