LOCUS BC004201 2124 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens interferon regulatory factor 5, mRNA (cDNA clone
MGC:3698 IMAGE:2963923), complete cds.
ACCESSION BC004201
VERSION BC004201.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2124)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2124)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 31, 2003 this sequence version replaced BC004201.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 10 Row: j Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38683858.
FEATURES Location/Qualifiers
source 1..2124
/db_xref="H-InvDB:HIT000031776"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3698 IMAGE:2963923"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2124
/gene="IRF5"
/db_xref="GeneID:3663"
/db_xref="HGNC:HGNC:6120"
/db_xref="MIM:607218"
CDS 41..1537
/gene="IRF5"
/codon_start=1
/product="interferon regulatory factor 5"
/protein_id="AAH04201.1"
/db_xref="GeneID:3663"
/db_xref="HGNC:HGNC:6120"
/db_xref="MIM:607218"
/translation="MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFC
IPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRL
IYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLT
EDVKWPPTLQPPTLRPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVL
EPGPLPASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFY
SQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDL
YAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPP
FEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQISNPDL
KDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPWPMHPAGMQ"
BASE COUNT 454 a 678 c 581 g 411 t
ORIGIN
1 gtccagctgc gcctggaaag cgagctcgga cccctctgcc atgaaccagt ccatcccagt
61 ggctcccacc ccaccccgcc gcgtgcggct gaagccctgg ctggtggccc aggtgaacag
121 ctgccagtac ccagggcttc aatgggtcaa cggggaaaag aaattattct gcatcccctg
181 gaggcatgcc acaaggcatg gtcccagcca ggacggagat aacaccatct tcaaggcctg
241 ggccaaggag acagggaaat acaccgaagg cgtggatgaa gccgatccgg ccaagtggaa
301 ggccaacctg cgctgtgccc ttaacaagag ccgggacttc cgcctcatct acgacgggcc
361 ccgggacatg ccacctcagc cctacaagat ctacgaggtc tgctccaatg gccctgctcc
421 cacagactcc cagccccctg aggattactc ttttggtgca ggagaggagg aggaagaaga
481 ggaagagctg cagaggatgt tgccaagcct gagcctcaca gaggatgtca agtggccgcc
541 cactctgcag ccgcccactc tgcggccgcc tactctgcag ccgcccactc tgcagccgcc
601 cgtggtgctg ggtccccctg ctccagaccc cagccccctg gctcctcccc ctggcaaccc
661 tgctggcttc agggagcttc tctctgaggt cctggagcct gggcccctgc ctgccagcct
721 gccccctgca ggcgaacagc tcctgccaga cctgctgatc agcccccaca tgctgcctct
781 gaccgacctg gagatcaagt ttcagtaccg ggggcggcca ccccgggccc tcaccatcag
841 caacccccat ggctgccggc tcttctacag ccagctggag gccacccagg agcaggtgga
901 actcttcggc cccataagcc tggagcaagt gcgcttcccc agccctgagg acatccccag
961 tgacaagcag cgcttctaca cgaaccagct gctggatgtc ctggaccgcg ggctcatcct
1021 ccagctacag ggccaggacc tttatgccat ccgcctgtgt cagtgcaagg tgttctggag
1081 cgggccttgt gcctcagccc atgactcatg ccccaacccc atccagcggg aggtcaagac
1141 caagcttttc agcctggagc attttctcaa tgagctcatc ctgttccaaa agggccagac
1201 caacacccca ccacccttcg agatcttctt ctgctttggg gaagaatggc ctgaccgcaa
1261 accccgagag aagaagctca ttactgtaca ggtggtgcct gtagcagctc gactgctgct
1321 ggagatgttc tcaggggagc tatcttggtc agctgatagt atccggctac agatctcaaa
1381 cccagacctc aaagaccgca tggtggagca attcaaggag ctccatcaca tctggcagtc
1441 ccagcagcgg ttgcagcctg tggcccaggc ccctcctgga gcaggccttg gtgttggcca
1501 ggggccctgg cctatgcacc cagctggcat gcaataacaa ggctgcagac ggtgactggc
1561 cctggcttcc tgggtggcgg tgcggactga tgtggagatg tgacagcccc gatgagcacc
1621 tggctggctg cagggtccta cctctgggtt tcctggaagt ggatctgggc caagaaggag
1681 agggagaaag gcccgagccc ctgccttccc gggcctttct ctcctgggct gtctctggtc
1741 tggtcagcct ggctctcggg aaattcagcc atgagcaggg aaagaactct cccaaccctg
1801 gggcctagct gtataggagg aattgcctaa gggtggccca ctcttgtgat tgccccattt
1861 cctctggcaa caaaagccag agtgttgtgg gccaagtccc cccacagggc ctctgcaggg
1921 catggccctg atttccctgg tttgagactc acttcctcat ctccctgtcc tctgagataa
1981 tatgagtgag cacttaggta tcatatcaga tgctcaaggc tggcagctac ccccttcttg
2041 agagtccaag aacctggagc agaaataatt tttatgtatt tttggattaa taaatgttaa
2101 aaacagaaaa aaaaaaaaaa aaaa
//