LOCUS BC003557 1186 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens apolipoprotein E, mRNA (cDNA clone MGC:1571 IMAGE:3355712), complete cds. ACCESSION BC003557 VERSION BC003557.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1186) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1186) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 6 Row: h Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 48762938. FEATURES Location/Qualifiers source 1..1186 /db_xref="H-InvDB:HIT000031595" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:1571 IMAGE:3355712" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_16" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1186 /gene="APOE" /gene_synonym="AD2" /gene_synonym="apoprotein" /gene_synonym="MGC1571" /db_xref="GeneID:348" /db_xref="HGNC:HGNC:613" /db_xref="MIM:107741" CDS 46..999 /gene="APOE" /gene_synonym="AD2" /gene_synonym="apoprotein" /gene_synonym="MGC1571" /codon_start=1 /product="apolipoprotein E" /protein_id="AAH03557.1" /db_xref="GeneID:348" /db_xref="HGNC:HGNC:613" /db_xref="MIM:107741" /translation="MKVLWAALLVTFLAGCQAKVEQAVETEPEPELRQQTEWQSGQRW ELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTP VAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLR KLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGRVRAATVGSLAG QPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAFQ ARLKSWFEPLVEDMQRQWAGLVEKVQAAVGTSAAPVPSDNH" BASE COUNT 248 a 366 c 425 g 147 t ORIGIN 1 ggacgtcctt ccccaggagc cgactggcca atcacaggca ggaagatgaa ggttctgtgg 61 gctgcgttgc tggtcacatt cctggcagga tgccaggcca aggtggagca agcggtggag 121 acagagccgg agcccgagct gcgccagcag accgagtggc agagcggcca gcgctgggaa 181 ctggcactgg gtcgcttttg ggattacctg cgctgggtgc agacactgtc tgagcaggtg 241 caggaggagc tgctcagctc ccaggtcacc caggaactga gggcgctgat ggacgagacc 301 atgaaggagt tgaaggccta caaatcggaa ctggaggaac aactgacccc ggtggcggag 361 gagacgcggg cacggctgtc caaggagctg caggcggcgc aggcccggct gggcgcggac 421 atggaggacg tgtgcggccg cctggtgcag taccgcggcg aggtgcaggc catgctcggc 481 cagagcaccg aggagctgcg ggtgcgcctc gcctcccacc tgcgcaagct gcgtaagcgg 541 ctcctccgcg atgccgatga cctgcagaag cgcctggcag tgtaccaggc cggggcccgc 601 gagggcgccg agcgcggcct cagcgccatc cgcgagcgcc tggggcccct ggtggaacag 661 ggccgcgtgc gggccgccac tgtgggctcc ctggccggcc agccgctaca ggagcgggcc 721 caggcctggg gcgagcggct gcgcgcgcgg atggaggaga tgggcagccg gacccgcgac 781 cgcctggacg aggtgaagga gcaggtggcg gaggtgcgcg ccaagctgga ggagcaggcc 841 cagcagatac gcctgcaggc cgaggccttc caggcccgcc tcaagagctg gttcgagccc 901 ctggtggaag acatgcagcg ccagtgggcc gggctggtgg agaaggtgca ggctgccgtg 961 ggcaccagcg ccgcccctgt gcccagcgac aatcactgaa cgccgaagcc tgcagccatg 1021 cgaccccacg ccaccccgtg cctcctgcct ccgcgcagcc tgcagcggga gaccctgtcc 1081 ccgccccagc cgtcctcctg gggtggaccc tagtttaata aagattcacc aagtttcacg 1141 caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaac //