LOCUS BC003557 1186 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens apolipoprotein E, mRNA (cDNA clone MGC:1571
IMAGE:3355712), complete cds.
ACCESSION BC003557
VERSION BC003557.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1186)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1186)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: h Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48762938.
FEATURES Location/Qualifiers
source 1..1186
/db_xref="H-InvDB:HIT000031595"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1571 IMAGE:3355712"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1186
/gene="APOE"
/gene_synonym="AD2"
/gene_synonym="apoprotein"
/gene_synonym="MGC1571"
/db_xref="GeneID:348"
/db_xref="HGNC:HGNC:613"
/db_xref="MIM:107741"
CDS 46..999
/gene="APOE"
/gene_synonym="AD2"
/gene_synonym="apoprotein"
/gene_synonym="MGC1571"
/codon_start=1
/product="apolipoprotein E"
/protein_id="AAH03557.1"
/db_xref="GeneID:348"
/db_xref="HGNC:HGNC:613"
/db_xref="MIM:107741"
/translation="MKVLWAALLVTFLAGCQAKVEQAVETEPEPELRQQTEWQSGQRW
ELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTP
VAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLR
KLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGRVRAATVGSLAG
QPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAFQ
ARLKSWFEPLVEDMQRQWAGLVEKVQAAVGTSAAPVPSDNH"
BASE COUNT 248 a 366 c 425 g 147 t
ORIGIN
1 ggacgtcctt ccccaggagc cgactggcca atcacaggca ggaagatgaa ggttctgtgg
61 gctgcgttgc tggtcacatt cctggcagga tgccaggcca aggtggagca agcggtggag
121 acagagccgg agcccgagct gcgccagcag accgagtggc agagcggcca gcgctgggaa
181 ctggcactgg gtcgcttttg ggattacctg cgctgggtgc agacactgtc tgagcaggtg
241 caggaggagc tgctcagctc ccaggtcacc caggaactga gggcgctgat ggacgagacc
301 atgaaggagt tgaaggccta caaatcggaa ctggaggaac aactgacccc ggtggcggag
361 gagacgcggg cacggctgtc caaggagctg caggcggcgc aggcccggct gggcgcggac
421 atggaggacg tgtgcggccg cctggtgcag taccgcggcg aggtgcaggc catgctcggc
481 cagagcaccg aggagctgcg ggtgcgcctc gcctcccacc tgcgcaagct gcgtaagcgg
541 ctcctccgcg atgccgatga cctgcagaag cgcctggcag tgtaccaggc cggggcccgc
601 gagggcgccg agcgcggcct cagcgccatc cgcgagcgcc tggggcccct ggtggaacag
661 ggccgcgtgc gggccgccac tgtgggctcc ctggccggcc agccgctaca ggagcgggcc
721 caggcctggg gcgagcggct gcgcgcgcgg atggaggaga tgggcagccg gacccgcgac
781 cgcctggacg aggtgaagga gcaggtggcg gaggtgcgcg ccaagctgga ggagcaggcc
841 cagcagatac gcctgcaggc cgaggccttc caggcccgcc tcaagagctg gttcgagccc
901 ctggtggaag acatgcagcg ccagtgggcc gggctggtgg agaaggtgca ggctgccgtg
961 ggcaccagcg ccgcccctgt gcccagcgac aatcactgaa cgccgaagcc tgcagccatg
1021 cgaccccacg ccaccccgtg cctcctgcct ccgcgcagcc tgcagcggga gaccctgtcc
1081 ccgccccagc cgtcctcctg gggtggaccc tagtttaata aagattcacc aagtttcacg
1141 caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaac
//