LOCUS BC003382 2074 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens sorting nexin 2, mRNA (cDNA clone MGC:5204 IMAGE:3048522), complete cds. ACCESSION BC003382 VERSION BC003382.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2074) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2074) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 3 Row: j Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23111037. FEATURES Location/Qualifiers source 1..2074 /db_xref="H-InvDB:HIT000031533" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:5204 IMAGE:3048522" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_10" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2074 /gene="SNX2" /gene_synonym="MGC5204" /gene_synonym="TRG-9" /db_xref="GeneID:6643" /db_xref="HGNC:HGNC:11173" /db_xref="MIM:605929" CDS 33..1592 /gene="SNX2" /gene_synonym="MGC5204" /gene_synonym="TRG-9" /codon_start=1 /product="sorting nexin 2" /protein_id="AAH03382.1" /db_xref="GeneID:6643" /db_xref="HGNC:HGNC:11173" /db_xref="MIM:605929" /translation="MAAEREPPPLGDGKPTDFEDLEDGEDLFTSTVSTLESSPSSPEP ASLPAEDISANSNGPKPTEVVLDDDREDLFAEATEEVSLDSPEREPILSSEPSPAVTP VTPTTLIAPRIESKSMSAPVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYM AYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTK VKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQAL SGAGILRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHR KELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSEL LSDYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEI REWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYW EAFLPEAKAIA" BASE COUNT 701 a 393 c 437 g 543 t ORIGIN 1 cccagctcgc gcagtcgttc gggtgagcga agatggcggc cgagagggaa cctcctccgc 61 tgggggacgg gaagcccacc gactttgagg atctggagga cggagaggac ctgttcacca 121 gcactgtctc caccctagag tcaagtccat catctccaga accagctagt cttcctgcag 181 aagatattag tgcaaactcc aatggcccaa aacccacaga agttgtatta gatgatgaca 241 gagaagatct ttttgcagaa gccacagaag aagtttcttt ggacagccct gaaagggaac 301 ctatcctatc ctcggaacct tctcctgcag tcacacctgt cactcctact acactcattg 361 ctcctagaat tgaatcaaag agtatgtctg ctcccgtgat ctttgataga tccagggaag 421 agattgaaga agaagcaaat ggagacattt ttgacataga aattggtgta tcagatccag 481 aaaaagttgg tgatggcatg aatgcctata tggcatatag agtaacaaca aagacatctc 541 tttccatgtt cagtaagagt gaattttcag tgaaaagaag attcagcgac tttcttggtt 601 tgcacagcaa attagcaagc aaatatttac atgttggtta tattgtgcca ccagctccag 661 aaaagagtat agtagggatg accaaggtca aagtgggtaa agaagactca tcatccactg 721 agtttgtaga aaaacggaga gcagctcttg aaaggtatct tcaaagaaca gtaaaacatc 781 caactttact acaggatcct gatttaaggc agttcttgga aagttcagag ctgcctagag 841 cagttaatac acaggctctg agtggagcag gaatattgag gatggtgaac aaggctgccg 901 acgctgtcaa caaaatgaca atcaagatga atgaatcgga tgcatggttt gaagaaaagc 961 agcagcaatt tgagaatctg gatcagcaac ttaggaaact tcatgtcagt gttgaagcct 1021 tggtctgtca tagaaaagaa ctttcagcca acacagctgc ctttgctaaa agtgctgcca 1081 tgttaggtaa ttctgaggat catactgctt tatctagagc tttgtctcag cttgcagagg 1141 ttgaggagaa gatagaccag ttacatcaag aacaagcttt tgctgacttt tatatgtttt 1201 cagaactact tagtgactac attcgtctta ttgctgcagt gaaaggtgtg tttgaccatc 1261 gaatgaagtg ctggcagaaa tgggaagatg ctcaaattac tttgctcaaa aaacgtgaag 1321 ctgaagcaaa aatgatggtt gctaacaaac cagataaaat acagcaagct aaaaatgaaa 1381 taagagagtg ggaggcgaaa gtgcaacaag gggaaagaga ttttgaacag atatctaaaa 1441 cgattcgaaa agaagtggga agatttgaga aagaacgagt gaaggatttt aaaaccgtta 1501 tcatcaagta cttagaatca ctagttcaaa cacaacaaca gctgataaaa tactgggaag 1561 cattcctacc tgaagccaaa gccattgcct agcaataaga ttgttgccgt taagaagacc 1621 ttggatgttg ttccagttat gctggattcc acagtgaaat catttaaaac catctaaata 1681 aaccactata tattttatga attacatgtg gttttatata cacacacaca cacacacaca 1741 cacacacaca cacactctga cattttatta caagctgcat gtcctgaccc tctttgaatt 1801 aagtggactg tggcatgaca ttctgcaata ctttgctgaa ttgaacacta ttgtgtctta 1861 aatacttgca ctaaatagtg cactgcaaga ccagaaaatt ttacaatatt ttttctttac 1921 aatatgttct gtagtatgtt taccctcttt atgaagtgaa ttaccaatgc tttgaataat 1981 gttcacttat acattcctgt acagaaatta cgattttgtg attacagtaa taaaatgata 2041 ttccttgtga aaaaaaaaaa aaaaaaaaaa aaaa //