LOCUS BC003382 2074 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 2, mRNA (cDNA clone MGC:5204
IMAGE:3048522), complete cds.
ACCESSION BC003382
VERSION BC003382.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2074)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2074)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: j Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23111037.
FEATURES Location/Qualifiers
source 1..2074
/db_xref="H-InvDB:HIT000031533"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5204 IMAGE:3048522"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2074
/gene="SNX2"
/gene_synonym="MGC5204"
/gene_synonym="TRG-9"
/db_xref="GeneID:6643"
/db_xref="HGNC:HGNC:11173"
/db_xref="MIM:605929"
CDS 33..1592
/gene="SNX2"
/gene_synonym="MGC5204"
/gene_synonym="TRG-9"
/codon_start=1
/product="sorting nexin 2"
/protein_id="AAH03382.1"
/db_xref="GeneID:6643"
/db_xref="HGNC:HGNC:11173"
/db_xref="MIM:605929"
/translation="MAAEREPPPLGDGKPTDFEDLEDGEDLFTSTVSTLESSPSSPEP
ASLPAEDISANSNGPKPTEVVLDDDREDLFAEATEEVSLDSPEREPILSSEPSPAVTP
VTPTTLIAPRIESKSMSAPVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYM
AYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTK
VKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQAL
SGAGILRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHR
KELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSEL
LSDYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEI
REWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYW
EAFLPEAKAIA"
BASE COUNT 701 a 393 c 437 g 543 t
ORIGIN
1 cccagctcgc gcagtcgttc gggtgagcga agatggcggc cgagagggaa cctcctccgc
61 tgggggacgg gaagcccacc gactttgagg atctggagga cggagaggac ctgttcacca
121 gcactgtctc caccctagag tcaagtccat catctccaga accagctagt cttcctgcag
181 aagatattag tgcaaactcc aatggcccaa aacccacaga agttgtatta gatgatgaca
241 gagaagatct ttttgcagaa gccacagaag aagtttcttt ggacagccct gaaagggaac
301 ctatcctatc ctcggaacct tctcctgcag tcacacctgt cactcctact acactcattg
361 ctcctagaat tgaatcaaag agtatgtctg ctcccgtgat ctttgataga tccagggaag
421 agattgaaga agaagcaaat ggagacattt ttgacataga aattggtgta tcagatccag
481 aaaaagttgg tgatggcatg aatgcctata tggcatatag agtaacaaca aagacatctc
541 tttccatgtt cagtaagagt gaattttcag tgaaaagaag attcagcgac tttcttggtt
601 tgcacagcaa attagcaagc aaatatttac atgttggtta tattgtgcca ccagctccag
661 aaaagagtat agtagggatg accaaggtca aagtgggtaa agaagactca tcatccactg
721 agtttgtaga aaaacggaga gcagctcttg aaaggtatct tcaaagaaca gtaaaacatc
781 caactttact acaggatcct gatttaaggc agttcttgga aagttcagag ctgcctagag
841 cagttaatac acaggctctg agtggagcag gaatattgag gatggtgaac aaggctgccg
901 acgctgtcaa caaaatgaca atcaagatga atgaatcgga tgcatggttt gaagaaaagc
961 agcagcaatt tgagaatctg gatcagcaac ttaggaaact tcatgtcagt gttgaagcct
1021 tggtctgtca tagaaaagaa ctttcagcca acacagctgc ctttgctaaa agtgctgcca
1081 tgttaggtaa ttctgaggat catactgctt tatctagagc tttgtctcag cttgcagagg
1141 ttgaggagaa gatagaccag ttacatcaag aacaagcttt tgctgacttt tatatgtttt
1201 cagaactact tagtgactac attcgtctta ttgctgcagt gaaaggtgtg tttgaccatc
1261 gaatgaagtg ctggcagaaa tgggaagatg ctcaaattac tttgctcaaa aaacgtgaag
1321 ctgaagcaaa aatgatggtt gctaacaaac cagataaaat acagcaagct aaaaatgaaa
1381 taagagagtg ggaggcgaaa gtgcaacaag gggaaagaga ttttgaacag atatctaaaa
1441 cgattcgaaa agaagtggga agatttgaga aagaacgagt gaaggatttt aaaaccgtta
1501 tcatcaagta cttagaatca ctagttcaaa cacaacaaca gctgataaaa tactgggaag
1561 cattcctacc tgaagccaaa gccattgcct agcaataaga ttgttgccgt taagaagacc
1621 ttggatgttg ttccagttat gctggattcc acagtgaaat catttaaaac catctaaata
1681 aaccactata tattttatga attacatgtg gttttatata cacacacaca cacacacaca
1741 cacacacaca cacactctga cattttatta caagctgcat gtcctgaccc tctttgaatt
1801 aagtggactg tggcatgaca ttctgcaata ctttgctgaa ttgaacacta ttgtgtctta
1861 aatacttgca ctaaatagtg cactgcaaga ccagaaaatt ttacaatatt ttttctttac
1921 aatatgttct gtagtatgtt taccctcttt atgaagtgaa ttaccaatgc tttgaataat
1981 gttcacttat acattcctgt acagaaatta cgattttgtg attacagtaa taaaatgata
2041 ttccttgtga aaaaaaaaaa aaaaaaaaaa aaaa
//