LOCUS BC003182 3394 bp mRNA linear HUM 03-OCT-2003 DEFINITION Homo sapiens glycogen synthase 1 (muscle), mRNA (cDNA clone MGC:4430 IMAGE:2958297), complete cds. ACCESSION BC003182 VERSION BC003182.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3394) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3394) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 9 Row: d Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4504232. FEATURES Location/Qualifiers source 1..3394 /db_xref="H-InvDB:HIT000031496" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:4430 IMAGE:2958297" /tissue_type="Kidney, renal cell adenocarcinoma" /clone_lib="NIH_MGC_14" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3394 /gene="GYS1" /gene_synonym="GYS" /db_xref="GeneID:2997" /db_xref="MIM:138570" CDS 199..2220 /gene="GYS1" /gene_synonym="GYS" /codon_start=1 /product="GYS1 protein" /protein_id="AAH03182.1" /db_xref="GeneID:2997" /db_xref="MIM:138570" /translation="MPLNRTLSMSSLPGLEDWEDEFDLENAVLFEVAWEVANKVGGIY TVLQTKAKVTGDEWGDNYFLVGPYTEQGVRTQVELLEAPTPALKRTLDSMNSKGCKFL AQSEEKPHVVAHFHEWLAGVGLCLCRARRLPVATIFTTHATLLGRYLCAGAVDFYNNL ENFNVDKEAGERQIYHRYCMERAAAHCAHVFTTVSQITAIEAQHLLKRKPDIVTPNGL NVKKFSAMHEFQNLHAQSKARIQEFVRGHFYGHLDFNLDKTLYFFIAGRYEFSNKGAD VFLEALARLNYLLRVNGSEQTVVAFFIMPARTNNFNVETLKGQAVRKQLWDTANTVKE KFGRKLYESLLVGSLPDMNKMLDKEDFTMMKRAIFATQRQSFPPVCTHNMLDDSSDPI LTTIRRIGLFNSSADRVKVIFHPEFLSSTSPLLPVDYEEFVRGCHLGVFPSYYEPWGY TPAECTVMGIPSISTNLSGFGCFMEEHIADPSAYGIYILDRRFRSLDDSCSQLTSFLY SFCQQSRRQRIIQRNRTERLSDLLDWKYLGRYYMSARHMALSKAFPEHFTYEPNEADA AQGYRYPRPASVPPSPSLSRHSSPHQSEDEEDPRNGPLEEDGERYDEDEEAAKDRRNI RAPEWPRRASCTSSTSGSKRNSVDTATSSSLSTPSEPLSPTSSLGEERN" misc_feature 1480..1608 /gene="GYS1" /gene_synonym="GYS" /note="Glycos_transf_1; Region: Glycosyl transferases group 1. Mutations in this domain may lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family" /db_xref="CDD:pfam00534" BASE COUNT 718 a 1060 c 913 g 703 t ORIGIN 1 cagtgacgct gcggcctcct tctgcctagg tcccaacgct tcggggcagg ggtgcggtct 61 tgcaatagga agccgagcgt cttgcaagct tcccgtcggg caccagctac tcggccccgc 121 accctacctg gtgcattccc tagacacctc cggggtccct acctggagat ccccggagcc 181 ccccttcctg cgccagccat gcctttaaac cgcactttgt ccatgtcctc actgccagga 241 ctggaggact gggaggatga attcgacctg gagaacgcag tgctcttcga agtggcctgg 301 gaggtggcta acaaggtggg tggcatctac acggtgctgc agacgaaggc gaaggtgaca 361 ggggacgaat ggggcgacaa ctacttcctg gtggggccgt acacggagca gggcgtgagg 421 acccaggtgg aactgctgga ggcccccacc ccggccctga agaggacact ggattccatg 481 aacagcaagg gctgcaagtt cctggcacag agtgaggaga agccacatgt ggttgctcac 541 ttccatgagt ggttggcagg cgttggactc tgcctgtgtc gtgcccggcg actgcctgta 601 gcaaccatct tcaccaccca tgccacgctg ctggggcgct acctgtgtgc cggtgccgtg 661 gacttctaca acaacctgga gaacttcaac gtggacaagg aagcagggga gaggcagatc 721 taccaccgat actgcatgga aagggcggca gcccactgcg ctcacgtctt cactactgtg 781 tcccagatca ccgccatcga ggcacagcac ttgctcaaga ggaaaccaga tattgtgacc 841 cccaatgggc tgaatgtgaa gaagttttct gccatgcatg agttccagaa cctccatgct 901 cagagcaagg ctcgaatcca ggagtttgtg cggggccatt tttatgggca tctggacttc 961 aacttggaca agaccttata cttctttatc gccggccgct atgagttctc caacaagggt 1021 gctgacgtct tcctggaggc attggctcgg ctcaactatc tgctcagagt gaacggcagc 1081 gagcagacag tggttgcctt cttcatcatg ccagcgcgga ccaacaattt caacgtggaa 1141 accctcaaag gccaagctgt gcgcaaacag ctttgggaca cggccaacac ggtgaaggaa 1201 aagttcggga ggaagcttta tgaatcctta ctggttggga gccttcccga catgaacaag 1261 atgctggata aggaagactt cactatgatg aagagagcca tctttgcaac gcagcggcag 1321 tctttccccc ctgtgtgcac ccacaatatg ctggatgact cctcagaccc catcctgacc 1381 accatccgcc gaatcggcct cttcaatagc agtgccgaca gggtgaaggt gattttccac 1441 ccggagttcc tctcctccac aagccccctg ctccctgtgg actatgagga gtttgtccgt 1501 ggctgtcacc ttggagtctt cccctcctac tatgagcctt ggggctacac accggctgag 1561 tgcacggtta tgggaatccc cagtatctcc accaatctct ccggcttcgg ctgcttcatg 1621 gaggaacaca tcgcagaccc ctcagcttac ggtatctaca ttcttgaccg gcggttccgc 1681 agcctggatg attcctgctc gcagctcacc tccttcctct acagtttctg tcagcagagc 1741 cggcggcagc gtatcatcca gcggaaccgc acggagcgcc tctccgacct tctggactgg 1801 aaatacctag gccggtacta tatgtctgcg cgccacatgg cgctgtccaa ggcctttcca 1861 gagcacttca cctacgagcc caacgaggcg gatgcggccc aggggtaccg ctacccacgg 1921 ccagcctcgg tgccaccgtc gccctcgctg tcacgacact ccagcccgca ccagagtgag 1981 gacgaggagg atccccggaa cgggccgctg gaggaagacg gcgagcgcta cgatgaggac 2041 gaggaggccg ccaaggaccg gcgcaacatc cgtgcaccag agtggccgcg ccgagcgtcc 2101 tgcacctcct ccaccagcgg cagcaagcgc aactctgtgg acacggccac ctccagctca 2161 ctcagcaccc cgagcgagcc cctcagcccc accagctccc tgggcgagga gcgtaactaa 2221 gtccgcccca ccacactccc cgcctgtcct gcctctctgc tccagagaga ggatgcagag 2281 gggtgctgct cctaaacccc cgctccagat ctgcactggg tgtggccccg cagtgccccc 2341 acccagtccg ccaaacactc caccccctcc agctccagtt tccaagttcc tgcactccag 2401 aatccacaaa gccgtgcctt tctctggctc cagaatatgc ataatcagcg ccctggagtc 2461 ccctgggcct ggaccgcttc ccagaggcca ggaatctgcc attactctgc ggtggtgcca 2521 gaggttttag gaaacctggc atggtgcttt caggtctggg gcttttagag ccccccgtgt 2581 ggcttacaaa ttctacagca tacagagcag gccacgctca ggcccggcat gcgggccacc 2641 aagttctgga aaccacgtgg tgtccctgcg aatggggcga tcaagtccag agccggggca 2701 ctttcagagt ttgaaggtaa ctgagagcag atggtcctcc atttcaactc cagaagtggg 2761 gctctgggag ggatgttcta gccctccctg gcatgtcaga gccaggctct gcctggagga 2821 tccctccatc cggctcctgt catcccctac actttggcca agcaagaggt ggtagaacca 2881 cttggctgct cattccttct ggaggacaca cagtctcagt ccagatgcct tcctgtcttt 2941 ctggcccttt ctggaccaga tcctactctt cctttctaaa tctgagatct ccctccaggg 3001 aatccgcctg cagaggacag agctggctgt cttcccccac ccctaacctg gcttattccc 3061 aactgctctg cccactgtga aaccactagg ttctaggtcc tggcttctag atctggaacc 3121 ttaccacgtt actgcatact gatccctttc ccatgatcca gaactgaggt cactgggttc 3181 tagaaccccc acatttacct cgaggctctt ccatccccaa actgtgccct gccttcagct 3241 ttggtgaaag ggagggcccc tcatgtgtgc tgtgctgtgt ctgcaccgct tggtttgcag 3301 ttgagagggg agggcaggag gggtgtgatt ggagtgtgtc cggagatgag atgaaaaaaa 3361 tacatctata tttaagaaaa aaaaaaaaaa aaaa //