LOCUS BC003182 3394 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens glycogen synthase 1 (muscle), mRNA (cDNA clone
MGC:4430 IMAGE:2958297), complete cds.
ACCESSION BC003182
VERSION BC003182.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3394)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3394)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: d Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504232.
FEATURES Location/Qualifiers
source 1..3394
/db_xref="H-InvDB:HIT000031496"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4430 IMAGE:2958297"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3394
/gene="GYS1"
/gene_synonym="GYS"
/db_xref="GeneID:2997"
/db_xref="MIM:138570"
CDS 199..2220
/gene="GYS1"
/gene_synonym="GYS"
/codon_start=1
/product="GYS1 protein"
/protein_id="AAH03182.1"
/db_xref="GeneID:2997"
/db_xref="MIM:138570"
/translation="MPLNRTLSMSSLPGLEDWEDEFDLENAVLFEVAWEVANKVGGIY
TVLQTKAKVTGDEWGDNYFLVGPYTEQGVRTQVELLEAPTPALKRTLDSMNSKGCKFL
AQSEEKPHVVAHFHEWLAGVGLCLCRARRLPVATIFTTHATLLGRYLCAGAVDFYNNL
ENFNVDKEAGERQIYHRYCMERAAAHCAHVFTTVSQITAIEAQHLLKRKPDIVTPNGL
NVKKFSAMHEFQNLHAQSKARIQEFVRGHFYGHLDFNLDKTLYFFIAGRYEFSNKGAD
VFLEALARLNYLLRVNGSEQTVVAFFIMPARTNNFNVETLKGQAVRKQLWDTANTVKE
KFGRKLYESLLVGSLPDMNKMLDKEDFTMMKRAIFATQRQSFPPVCTHNMLDDSSDPI
LTTIRRIGLFNSSADRVKVIFHPEFLSSTSPLLPVDYEEFVRGCHLGVFPSYYEPWGY
TPAECTVMGIPSISTNLSGFGCFMEEHIADPSAYGIYILDRRFRSLDDSCSQLTSFLY
SFCQQSRRQRIIQRNRTERLSDLLDWKYLGRYYMSARHMALSKAFPEHFTYEPNEADA
AQGYRYPRPASVPPSPSLSRHSSPHQSEDEEDPRNGPLEEDGERYDEDEEAAKDRRNI
RAPEWPRRASCTSSTSGSKRNSVDTATSSSLSTPSEPLSPTSSLGEERN"
misc_feature 1480..1608
/gene="GYS1"
/gene_synonym="GYS"
/note="Glycos_transf_1; Region: Glycosyl transferases
group 1. Mutations in this domain may lead to disease
(Paroxysmal Nocturnal haemoglobinuria). Members of this
family transfer activated sugars to a variety of
substrates, including glycogen, Fructose-6-phosphate and
lipopolysaccharides. Members of this family transfer UDP,
ADP, GDP or CMP linked sugars. The eukaryotic glycogen
synthases may be distant members of this family"
/db_xref="CDD:pfam00534"
BASE COUNT 718 a 1060 c 913 g 703 t
ORIGIN
1 cagtgacgct gcggcctcct tctgcctagg tcccaacgct tcggggcagg ggtgcggtct
61 tgcaatagga agccgagcgt cttgcaagct tcccgtcggg caccagctac tcggccccgc
121 accctacctg gtgcattccc tagacacctc cggggtccct acctggagat ccccggagcc
181 ccccttcctg cgccagccat gcctttaaac cgcactttgt ccatgtcctc actgccagga
241 ctggaggact gggaggatga attcgacctg gagaacgcag tgctcttcga agtggcctgg
301 gaggtggcta acaaggtggg tggcatctac acggtgctgc agacgaaggc gaaggtgaca
361 ggggacgaat ggggcgacaa ctacttcctg gtggggccgt acacggagca gggcgtgagg
421 acccaggtgg aactgctgga ggcccccacc ccggccctga agaggacact ggattccatg
481 aacagcaagg gctgcaagtt cctggcacag agtgaggaga agccacatgt ggttgctcac
541 ttccatgagt ggttggcagg cgttggactc tgcctgtgtc gtgcccggcg actgcctgta
601 gcaaccatct tcaccaccca tgccacgctg ctggggcgct acctgtgtgc cggtgccgtg
661 gacttctaca acaacctgga gaacttcaac gtggacaagg aagcagggga gaggcagatc
721 taccaccgat actgcatgga aagggcggca gcccactgcg ctcacgtctt cactactgtg
781 tcccagatca ccgccatcga ggcacagcac ttgctcaaga ggaaaccaga tattgtgacc
841 cccaatgggc tgaatgtgaa gaagttttct gccatgcatg agttccagaa cctccatgct
901 cagagcaagg ctcgaatcca ggagtttgtg cggggccatt tttatgggca tctggacttc
961 aacttggaca agaccttata cttctttatc gccggccgct atgagttctc caacaagggt
1021 gctgacgtct tcctggaggc attggctcgg ctcaactatc tgctcagagt gaacggcagc
1081 gagcagacag tggttgcctt cttcatcatg ccagcgcgga ccaacaattt caacgtggaa
1141 accctcaaag gccaagctgt gcgcaaacag ctttgggaca cggccaacac ggtgaaggaa
1201 aagttcggga ggaagcttta tgaatcctta ctggttggga gccttcccga catgaacaag
1261 atgctggata aggaagactt cactatgatg aagagagcca tctttgcaac gcagcggcag
1321 tctttccccc ctgtgtgcac ccacaatatg ctggatgact cctcagaccc catcctgacc
1381 accatccgcc gaatcggcct cttcaatagc agtgccgaca gggtgaaggt gattttccac
1441 ccggagttcc tctcctccac aagccccctg ctccctgtgg actatgagga gtttgtccgt
1501 ggctgtcacc ttggagtctt cccctcctac tatgagcctt ggggctacac accggctgag
1561 tgcacggtta tgggaatccc cagtatctcc accaatctct ccggcttcgg ctgcttcatg
1621 gaggaacaca tcgcagaccc ctcagcttac ggtatctaca ttcttgaccg gcggttccgc
1681 agcctggatg attcctgctc gcagctcacc tccttcctct acagtttctg tcagcagagc
1741 cggcggcagc gtatcatcca gcggaaccgc acggagcgcc tctccgacct tctggactgg
1801 aaatacctag gccggtacta tatgtctgcg cgccacatgg cgctgtccaa ggcctttcca
1861 gagcacttca cctacgagcc caacgaggcg gatgcggccc aggggtaccg ctacccacgg
1921 ccagcctcgg tgccaccgtc gccctcgctg tcacgacact ccagcccgca ccagagtgag
1981 gacgaggagg atccccggaa cgggccgctg gaggaagacg gcgagcgcta cgatgaggac
2041 gaggaggccg ccaaggaccg gcgcaacatc cgtgcaccag agtggccgcg ccgagcgtcc
2101 tgcacctcct ccaccagcgg cagcaagcgc aactctgtgg acacggccac ctccagctca
2161 ctcagcaccc cgagcgagcc cctcagcccc accagctccc tgggcgagga gcgtaactaa
2221 gtccgcccca ccacactccc cgcctgtcct gcctctctgc tccagagaga ggatgcagag
2281 gggtgctgct cctaaacccc cgctccagat ctgcactggg tgtggccccg cagtgccccc
2341 acccagtccg ccaaacactc caccccctcc agctccagtt tccaagttcc tgcactccag
2401 aatccacaaa gccgtgcctt tctctggctc cagaatatgc ataatcagcg ccctggagtc
2461 ccctgggcct ggaccgcttc ccagaggcca ggaatctgcc attactctgc ggtggtgcca
2521 gaggttttag gaaacctggc atggtgcttt caggtctggg gcttttagag ccccccgtgt
2581 ggcttacaaa ttctacagca tacagagcag gccacgctca ggcccggcat gcgggccacc
2641 aagttctgga aaccacgtgg tgtccctgcg aatggggcga tcaagtccag agccggggca
2701 ctttcagagt ttgaaggtaa ctgagagcag atggtcctcc atttcaactc cagaagtggg
2761 gctctgggag ggatgttcta gccctccctg gcatgtcaga gccaggctct gcctggagga
2821 tccctccatc cggctcctgt catcccctac actttggcca agcaagaggt ggtagaacca
2881 cttggctgct cattccttct ggaggacaca cagtctcagt ccagatgcct tcctgtcttt
2941 ctggcccttt ctggaccaga tcctactctt cctttctaaa tctgagatct ccctccaggg
3001 aatccgcctg cagaggacag agctggctgt cttcccccac ccctaacctg gcttattccc
3061 aactgctctg cccactgtga aaccactagg ttctaggtcc tggcttctag atctggaacc
3121 ttaccacgtt actgcatact gatccctttc ccatgatcca gaactgaggt cactgggttc
3181 tagaaccccc acatttacct cgaggctctt ccatccccaa actgtgccct gccttcagct
3241 ttggtgaaag ggagggcccc tcatgtgtgc tgtgctgtgt ctgcaccgct tggtttgcag
3301 ttgagagggg agggcaggag gggtgtgatt ggagtgtgtc cggagatgag atgaaaaaaa
3361 tacatctata tttaagaaaa aaaaaaaaaa aaaa
//