LOCUS BC002558 3454 bp mRNA linear HUM 19-JUN-2006 DEFINITION Homo sapiens jumonji domain containing 2A, mRNA (cDNA clone MGC:1972 IMAGE:3138875), complete cds. ACCESSION BC002558 VERSION BC002558.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3454) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3454) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC002558.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 4 Row: l Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 7662245. FEATURES Location/Qualifiers source 1..3454 /db_xref="H-InvDB:HIT000030990" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:1972 IMAGE:3138875" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_21" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3454 /gene="JMJD2A" /gene_synonym="JHDM3A" /gene_synonym="KIAA0677" /db_xref="GeneID:9682" /db_xref="HGNC:HGNC:22978" /db_xref="MIM:609764" CDS 135..3329 /gene="JMJD2A" /gene_synonym="JHDM3A" /gene_synonym="KIAA0677" /codon_start=1 /product="jumonji domain containing 2A" /protein_id="AAH02558.1" /db_xref="GeneID:9682" /db_xref="HGNC:HGNC:22978" /db_xref="MIM:609764" /translation="MASESETLNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGL AKVVPPKEWKPRASYDDIDDLVIPAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIAN SDKYCTPRYSEFEELERKYWKNLTFNPPIYGADVNGTLYEKHVDEWNIGRLRTILDLV EKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKR LERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYH AGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRKFQPERYKLWKA GKDNTVIDHTLPTPEAAEFLKESELPPRAGNEEECPEEDMEGVEDGEEGDLKTSLAKH RIGTKRHRVCLEIPQEVSQSELFPKEDLSSEQYEMTECPAALAPVRPTHSSVRQVEDG LTFPDYSDSTEVKFEELKNVKLEEEDEEEEQEAAALDLSVNPASVGGRLVFSGSKKKS SSSLGSGSSRDSISSDSETSEPLSCRAQGQTGVLTVHSYAKGDGRVTVGEPCTRKKGS AARSFSERELAEVADEYMFSLEENKKSKGRRQPLSKLPRHHPLVLQECVSDDETSEQL TPEEEAEETEAWAKPLSQLWQNRPPNFEAEKEFNETMAQQAPHCAVCMIFQTYHQVEF GGFNQNCGNASDLAPQKQRTKPLIPEMCFTSTGCSTDINLSTPYLEEDGTSILVSCKK CSVRVHASCYGVPPAKASEDWMCSRCSANALEEDCCLCSLRGGALQRANDDRWVHVSC AVAILEARFVNIAERSPVDVSKIPLPRFKLKCIFCKKRRKRTAGCCVQCSHGRCPTAF HVSCAQAAGVMMQPDDWPFVVFITCFRHKIPNLERAKGALQSITAGQKVISKHKNGRF YQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQFGPPAEGEVVQVRWTDGQV YGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEELPKRVKSRLSVASDMRFNEIF TEKEVKQEKKRQRVINSRYREDYIEPALYRAIME" BASE COUNT 930 a 802 c 937 g 785 t ORIGIN 1 ggagtttcgg ccttcgcctg ctggaaaagc agtaggatcg gccagtggcg acagcaggag 61 ctgagcctaa gccctggcgg ggctttgggc tgtagattcc tgtctgacta aagggacctc 121 aaaaaggagg gaaaatggct tctgagtctg aaactctgaa tcccagtgct aggataatga 181 ccttttatcc aactatggaa gagttccgaa acttcagtag atacattgcc tacattgaat 241 cccaaggagc tcatcgggca gggctagcca aggttgttcc tccaaaagag tggaagccac 301 gagcatccta tgatgacatt gatgatttgg tcattcctgc ccccattcaa cagctggtga 361 cggggcagtc tggcctcttt actcagtaca acatacagaa gaaagccatg actgttcgag 421 agttccgcaa gatagccaat agcgataagt actgtacccc acgctatagt gagtttgaag 481 agctcgagcg gaaatactgg aaaaatctta cattcaatcc tccaatctat ggtgcagatg 541 tgaatggtac cctctatgaa aagcatgttg atgagtggaa tattggccgg ctgagaacaa 601 tcctggactt ggtggaaaag gagagtggga tcaccattga gggtgtgaac accccatacc 661 tgtactttgg catgtggaag acatcctttg cttggcacac tgaagacatg gacctctaca 721 gcatcaacta cctgcacttt ggagaaccaa agtcctggta ctctgttcca cctgagcatg 781 gaaagcggtt ggaacgcctc gccaaaggct ttttcccagg aagtgctcaa agctgtgagg 841 catttctccg ccacaagatg accctgattt ccccgttaat gctgaagaaa tatggaattc 901 cctttgacaa ggtgactcaa gaggctggag agtttatgat cactttccct tatggttacc 961 atgccggctt taaccatggt tttaactgtg cggagtctac caattttgct acccgtcggt 1021 ggattgagta cggcaagcaa gctgtgctgt gctcctgtag aaaggacatg gtgaagatct 1081 ccatggatgt gtttgtgaga aagttccagc cagaaaggta caaactttgg aaagctggga 1141 aggacaacac agttattgac catactctgc ccacgccaga agcagctgag tttcttaagg 1201 agagtgaact gcctccaaga gctggcaacg aggaggagtg cccagaggag gacatggaag 1261 gggtggagga tggagaggaa ggagacctga agacaagcct ggccaagcac cgaataggga 1321 caaagaggca ccgagtttgt cttgaaatac cacaggaggt gagtcagagt gagctcttcc 1381 ccaaggagga tctgagttct gagcagtatg agatgacgga gtgcccggca gccctcgccc 1441 ctgtgaggcc cacccatagc tctgtgcggc aagttgagga tggtcttacc ttcccagatt 1501 attctgactc cactgaagtc aaatttgaag agcttaaaaa tgtcaaacta gaagaggagg 1561 atgaggagga agaacaagaa gcagctgcct tggatctttc tgtgaatcct gcgtctgtag 1621 ggggacgcct tgtcttctca ggctccaaaa agaaatcatc ttctagcctg ggctctggct 1681 cttcacggga ttctatctct tctgattcag aaactagtga gcctctctcc tgccgagccc 1741 aagggcaaac gggagttctc actgtgcaca gttatgccaa aggggatggc agggtcactg 1801 tgggagagcc atgcacgagg aagaaaggaa gcgccgctag aagtttcagt gagcgggagc 1861 tggcagaggt tgcagatgaa tacatgtttt ccctagaaga gaataagaag tccaagggac 1921 gccgtcagcc tttaagcaag ctcccccgcc atcacccact tgtgctgcag gagtgtgtca 1981 gtgatgatga gacatctgaa cagctgaccc ctgaggaaga ggctgaggag acagaggcct 2041 gggccaagcc tctgagccaa ctgtggcaga accgacctcc aaactttgag gctgagaagg 2101 aattcaatga gaccatggcc caacaggccc ctcactgcgc tgtctgtatg atcttccaga 2161 cttatcatca ggttgaattt ggaggcttta atcagaactg tggaaatgct tcagatttag 2221 ccccccagaa gcagaggacc aagccattga ttccagaaat gtgcttcact tcgactggct 2281 gcagcacgga catcaacctt tctactcctt atcttgagga ggatggcacc agcatactcg 2341 tttcctgcaa gaagtgcagc gtccgggtcc atgccagttg ctatggggtc ccccctgcaa 2401 aggcttctga agactggatg tgttctcggt gttcagccaa tgccctagag gaggactgct 2461 gtttatgctc attacgagga ggggccctgc agagagcaaa tgatgacagg tgggtccacg 2521 tttcatgtgc tgtggcaatt ctggaagcaa ggtttgtcaa cattgcagaa agaagtccgg 2581 tggatgtgag caaaatcccc ctgccccgct tcaaactgaa atgtatcttc tgtaagaagc 2641 ggaggaaaag aactgctggc tgctgtgtgc agtgttctca cggccgctgc ccaactgcct 2701 tccatgtgag ctgcgcccag gctgccggtg tgatgatgca gcctgacgac tggccttttg 2761 tggtcttcat tacctgcttt cggcacaaga ttcctaattt ggagcgtgcc aagggggcct 2821 tgcaaagcat cactgcaggc cagaaagtca ttagcaagca taagaacggg cgcttctacc 2881 agtgtgaagt ggtcaggctc accaccgaga ccttctatga agtcaacttt gatgatggct 2941 ccttcagcga caatctttat cctgaggaca tagtgagcca ggactgtctc cagtttggtc 3001 ctcctgctga aggggaagtg gtccaagtga gatggacaga cggccaagtc tatggagcca 3061 agtttgtggc ctcccaccct atccaaatgt accaggtgga gtttgaggat ggctcacaac 3121 ttgtggttaa gagagatgat gtatacacac tggatgaaga gcttcccaag agagtcaaat 3181 ctagactgtc agtagcctca gacatgcgct tcaatgagat tttcacagag aaagaggtta 3241 agcaagaaaa gaaacggcaa cgagttatca actcaagata ccgggaagat tatattgagc 3301 ctgcactata ccgggccatc atggagtagg tgcttccagg gtccaaggga ttctcagcca 3361 tccaggcaag agcactctgg gttccacagc acagcagaca tggaacgctg aagtctctga 3421 aagtgaagtt gtaaaaagaa aaaaaaaaaa aaaa //