LOCUS BC002558 3454 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens jumonji domain containing 2A, mRNA (cDNA clone
MGC:1972 IMAGE:3138875), complete cds.
ACCESSION BC002558
VERSION BC002558.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3454)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3454)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002558.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: l Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7662245.
FEATURES Location/Qualifiers
source 1..3454
/db_xref="H-InvDB:HIT000030990"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1972 IMAGE:3138875"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3454
/gene="JMJD2A"
/gene_synonym="JHDM3A"
/gene_synonym="KIAA0677"
/db_xref="GeneID:9682"
/db_xref="HGNC:HGNC:22978"
/db_xref="MIM:609764"
CDS 135..3329
/gene="JMJD2A"
/gene_synonym="JHDM3A"
/gene_synonym="KIAA0677"
/codon_start=1
/product="jumonji domain containing 2A"
/protein_id="AAH02558.1"
/db_xref="GeneID:9682"
/db_xref="HGNC:HGNC:22978"
/db_xref="MIM:609764"
/translation="MASESETLNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGL
AKVVPPKEWKPRASYDDIDDLVIPAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIAN
SDKYCTPRYSEFEELERKYWKNLTFNPPIYGADVNGTLYEKHVDEWNIGRLRTILDLV
EKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKR
LERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYH
AGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRKFQPERYKLWKA
GKDNTVIDHTLPTPEAAEFLKESELPPRAGNEEECPEEDMEGVEDGEEGDLKTSLAKH
RIGTKRHRVCLEIPQEVSQSELFPKEDLSSEQYEMTECPAALAPVRPTHSSVRQVEDG
LTFPDYSDSTEVKFEELKNVKLEEEDEEEEQEAAALDLSVNPASVGGRLVFSGSKKKS
SSSLGSGSSRDSISSDSETSEPLSCRAQGQTGVLTVHSYAKGDGRVTVGEPCTRKKGS
AARSFSERELAEVADEYMFSLEENKKSKGRRQPLSKLPRHHPLVLQECVSDDETSEQL
TPEEEAEETEAWAKPLSQLWQNRPPNFEAEKEFNETMAQQAPHCAVCMIFQTYHQVEF
GGFNQNCGNASDLAPQKQRTKPLIPEMCFTSTGCSTDINLSTPYLEEDGTSILVSCKK
CSVRVHASCYGVPPAKASEDWMCSRCSANALEEDCCLCSLRGGALQRANDDRWVHVSC
AVAILEARFVNIAERSPVDVSKIPLPRFKLKCIFCKKRRKRTAGCCVQCSHGRCPTAF
HVSCAQAAGVMMQPDDWPFVVFITCFRHKIPNLERAKGALQSITAGQKVISKHKNGRF
YQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQFGPPAEGEVVQVRWTDGQV
YGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEELPKRVKSRLSVASDMRFNEIF
TEKEVKQEKKRQRVINSRYREDYIEPALYRAIME"
BASE COUNT 930 a 802 c 937 g 785 t
ORIGIN
1 ggagtttcgg ccttcgcctg ctggaaaagc agtaggatcg gccagtggcg acagcaggag
61 ctgagcctaa gccctggcgg ggctttgggc tgtagattcc tgtctgacta aagggacctc
121 aaaaaggagg gaaaatggct tctgagtctg aaactctgaa tcccagtgct aggataatga
181 ccttttatcc aactatggaa gagttccgaa acttcagtag atacattgcc tacattgaat
241 cccaaggagc tcatcgggca gggctagcca aggttgttcc tccaaaagag tggaagccac
301 gagcatccta tgatgacatt gatgatttgg tcattcctgc ccccattcaa cagctggtga
361 cggggcagtc tggcctcttt actcagtaca acatacagaa gaaagccatg actgttcgag
421 agttccgcaa gatagccaat agcgataagt actgtacccc acgctatagt gagtttgaag
481 agctcgagcg gaaatactgg aaaaatctta cattcaatcc tccaatctat ggtgcagatg
541 tgaatggtac cctctatgaa aagcatgttg atgagtggaa tattggccgg ctgagaacaa
601 tcctggactt ggtggaaaag gagagtggga tcaccattga gggtgtgaac accccatacc
661 tgtactttgg catgtggaag acatcctttg cttggcacac tgaagacatg gacctctaca
721 gcatcaacta cctgcacttt ggagaaccaa agtcctggta ctctgttcca cctgagcatg
781 gaaagcggtt ggaacgcctc gccaaaggct ttttcccagg aagtgctcaa agctgtgagg
841 catttctccg ccacaagatg accctgattt ccccgttaat gctgaagaaa tatggaattc
901 cctttgacaa ggtgactcaa gaggctggag agtttatgat cactttccct tatggttacc
961 atgccggctt taaccatggt tttaactgtg cggagtctac caattttgct acccgtcggt
1021 ggattgagta cggcaagcaa gctgtgctgt gctcctgtag aaaggacatg gtgaagatct
1081 ccatggatgt gtttgtgaga aagttccagc cagaaaggta caaactttgg aaagctggga
1141 aggacaacac agttattgac catactctgc ccacgccaga agcagctgag tttcttaagg
1201 agagtgaact gcctccaaga gctggcaacg aggaggagtg cccagaggag gacatggaag
1261 gggtggagga tggagaggaa ggagacctga agacaagcct ggccaagcac cgaataggga
1321 caaagaggca ccgagtttgt cttgaaatac cacaggaggt gagtcagagt gagctcttcc
1381 ccaaggagga tctgagttct gagcagtatg agatgacgga gtgcccggca gccctcgccc
1441 ctgtgaggcc cacccatagc tctgtgcggc aagttgagga tggtcttacc ttcccagatt
1501 attctgactc cactgaagtc aaatttgaag agcttaaaaa tgtcaaacta gaagaggagg
1561 atgaggagga agaacaagaa gcagctgcct tggatctttc tgtgaatcct gcgtctgtag
1621 ggggacgcct tgtcttctca ggctccaaaa agaaatcatc ttctagcctg ggctctggct
1681 cttcacggga ttctatctct tctgattcag aaactagtga gcctctctcc tgccgagccc
1741 aagggcaaac gggagttctc actgtgcaca gttatgccaa aggggatggc agggtcactg
1801 tgggagagcc atgcacgagg aagaaaggaa gcgccgctag aagtttcagt gagcgggagc
1861 tggcagaggt tgcagatgaa tacatgtttt ccctagaaga gaataagaag tccaagggac
1921 gccgtcagcc tttaagcaag ctcccccgcc atcacccact tgtgctgcag gagtgtgtca
1981 gtgatgatga gacatctgaa cagctgaccc ctgaggaaga ggctgaggag acagaggcct
2041 gggccaagcc tctgagccaa ctgtggcaga accgacctcc aaactttgag gctgagaagg
2101 aattcaatga gaccatggcc caacaggccc ctcactgcgc tgtctgtatg atcttccaga
2161 cttatcatca ggttgaattt ggaggcttta atcagaactg tggaaatgct tcagatttag
2221 ccccccagaa gcagaggacc aagccattga ttccagaaat gtgcttcact tcgactggct
2281 gcagcacgga catcaacctt tctactcctt atcttgagga ggatggcacc agcatactcg
2341 tttcctgcaa gaagtgcagc gtccgggtcc atgccagttg ctatggggtc ccccctgcaa
2401 aggcttctga agactggatg tgttctcggt gttcagccaa tgccctagag gaggactgct
2461 gtttatgctc attacgagga ggggccctgc agagagcaaa tgatgacagg tgggtccacg
2521 tttcatgtgc tgtggcaatt ctggaagcaa ggtttgtcaa cattgcagaa agaagtccgg
2581 tggatgtgag caaaatcccc ctgccccgct tcaaactgaa atgtatcttc tgtaagaagc
2641 ggaggaaaag aactgctggc tgctgtgtgc agtgttctca cggccgctgc ccaactgcct
2701 tccatgtgag ctgcgcccag gctgccggtg tgatgatgca gcctgacgac tggccttttg
2761 tggtcttcat tacctgcttt cggcacaaga ttcctaattt ggagcgtgcc aagggggcct
2821 tgcaaagcat cactgcaggc cagaaagtca ttagcaagca taagaacggg cgcttctacc
2881 agtgtgaagt ggtcaggctc accaccgaga ccttctatga agtcaacttt gatgatggct
2941 ccttcagcga caatctttat cctgaggaca tagtgagcca ggactgtctc cagtttggtc
3001 ctcctgctga aggggaagtg gtccaagtga gatggacaga cggccaagtc tatggagcca
3061 agtttgtggc ctcccaccct atccaaatgt accaggtgga gtttgaggat ggctcacaac
3121 ttgtggttaa gagagatgat gtatacacac tggatgaaga gcttcccaag agagtcaaat
3181 ctagactgtc agtagcctca gacatgcgct tcaatgagat tttcacagag aaagaggtta
3241 agcaagaaaa gaaacggcaa cgagttatca actcaagata ccgggaagat tatattgagc
3301 ctgcactata ccgggccatc atggagtagg tgcttccagg gtccaaggga ttctcagcca
3361 tccaggcaag agcactctgg gttccacagc acagcagaca tggaacgctg aagtctctga
3421 aagtgaagtt gtaaaaagaa aaaaaaaaaa aaaa
//