LOCUS BC002552 1376 bp mRNA linear HUM 04-OCT-2003 DEFINITION Homo sapiens high-mobility group 20B, mRNA (cDNA clone MGC:1965 IMAGE:3138919), complete cds. ACCESSION BC002552 VERSION BC002552.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1376) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1376) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC002552.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 4 Row: j Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 5454079. FEATURES Location/Qualifiers source 1..1376 /db_xref="H-InvDB:HIT000030985" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:1965 IMAGE:3138919" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_21" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1376 /gene="HMG20B" /gene_synonym="BRAF25" /gene_synonym="BRAF35" /gene_synonym="HMGX2" /gene_synonym="SMARCE1r" /gene_synonym="SOXL" /db_xref="GeneID:10362" /db_xref="MIM:605535" CDS 59..1012 /gene="HMG20B" /gene_synonym="BRAF25" /gene_synonym="BRAF35" /gene_synonym="HMGX2" /gene_synonym="SMARCE1r" /gene_synonym="SOXL" /codon_start=1 /product="HMG20B protein" /protein_id="AAH02552.1" /db_xref="GeneID:10362" /db_xref="MIM:605535" /translation="MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKG SHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITK MLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDS SSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNA VLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETPT LGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL" misc_feature 266..469 /gene="HMG20B" /gene_synonym="BRAF25" /gene_synonym="BRAF35" /gene_synonym="HMGX2" /gene_synonym="SMARCE1r" /gene_synonym="SOXL" /note="HMG_box; Region: HMG (high mobility group) box" /db_xref="CDD:pfam00505" BASE COUNT 323 a 412 c 441 g 200 t ORIGIN 1 gcgtcgcgca gtcgggaggt ccgggaaagt ttctttggag gtccggcccg gagcggccat 61 gtcccacggc cccaagcagc ccggcgcggc cgccgcgccg gcgggcggca aggctccggg 121 ccagcatggg ggcttcgtgg tgactgtcaa gcaagagcgc ggcgagggtc cacgcgcggg 181 cgagaagggg tcccacgagg aggagccggt gaagaaacgc ggctggccca agggcaagaa 241 gcggaagaag attctgccga atgggcccaa ggcaccggtc acgggctacg tgcgcttcct 301 gaacgagcgg cgcgagcaga tccgcacgcg ccacccggat ctgccctttc ccgagatcac 361 caagatgctg ggcgccgagt ggagcaagct gcagccaacg gaaaagcagc ggtacctgga 421 tgaggccgag agagagaagc agcagtacat gaaggagctg cgggcgtacc agcagtctga 481 agcctataag atgtgcacgg agaagatcca ggagaagaag atcaagaaag aagactcgag 541 ctctgggctc atgaacactc tcctgaatgg acacaagggt ggggactgcg atggcttctc 601 caccttcgat gttcccatct tcactgaaga gttcttggac caaaacaaag cgcgtgaggc 661 ggagcttcgg cgcttgcgga agatgaatgt ggccttcgag gagcagaacg cggtactgca 721 gaggcacacg cagagcatga gcagcgcgcg cgagcgtctg gagcaggagc tggcgctgga 781 ggagcggagg acgctggcgc tgcagcagca gctccaggcc gtgcgccagg cgctcaccgc 841 cagcttcgcc tcactgccgg tgccgggcac gggcgaaacg cccacgctgg gcactctgga 901 cttctacatg gcccggcttc acggagccat cgagcgcgac cccgcccagc acgagaagct 961 catcgtccgc atcaaggaaa tcctggccca ggtcgccagc gagcacctgt gaggagtggg 1021 cgggcccacg atgcagagga gaagctgtgg gcgcggccct gccacacccc accccgtgga 1081 cgagaggctg ggggtccacc ctttggggcc tggtcccatc ctgcaccttg ggggctccag 1141 cccccctaaa attaaatttc tgcagcatcc ctttagcttt caatctcccc agccccctga 1201 acccggaaaa agcactcgct gcgcgataca cccagaagaa cctcacagcc gagggtgccc 1261 ctcctcggag gacagccacg cgctacactg gctccttctc actgctggat ccggactttt 1321 taaataaaaa caagtaaaat ttgtgtttta aaaaaaaaaa aaaaaaaaaa aaaaaa //