LOCUS BC002552 1376 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens high-mobility group 20B, mRNA (cDNA clone MGC:1965
IMAGE:3138919), complete cds.
ACCESSION BC002552
VERSION BC002552.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1376)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1376)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002552.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: j Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5454079.
FEATURES Location/Qualifiers
source 1..1376
/db_xref="H-InvDB:HIT000030985"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1965 IMAGE:3138919"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1376
/gene="HMG20B"
/gene_synonym="BRAF25"
/gene_synonym="BRAF35"
/gene_synonym="HMGX2"
/gene_synonym="SMARCE1r"
/gene_synonym="SOXL"
/db_xref="GeneID:10362"
/db_xref="MIM:605535"
CDS 59..1012
/gene="HMG20B"
/gene_synonym="BRAF25"
/gene_synonym="BRAF35"
/gene_synonym="HMGX2"
/gene_synonym="SMARCE1r"
/gene_synonym="SOXL"
/codon_start=1
/product="HMG20B protein"
/protein_id="AAH02552.1"
/db_xref="GeneID:10362"
/db_xref="MIM:605535"
/translation="MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKG
SHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITK
MLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDS
SSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNA
VLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETPT
LGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL"
misc_feature 266..469
/gene="HMG20B"
/gene_synonym="BRAF25"
/gene_synonym="BRAF35"
/gene_synonym="HMGX2"
/gene_synonym="SMARCE1r"
/gene_synonym="SOXL"
/note="HMG_box; Region: HMG (high mobility group) box"
/db_xref="CDD:pfam00505"
BASE COUNT 323 a 412 c 441 g 200 t
ORIGIN
1 gcgtcgcgca gtcgggaggt ccgggaaagt ttctttggag gtccggcccg gagcggccat
61 gtcccacggc cccaagcagc ccggcgcggc cgccgcgccg gcgggcggca aggctccggg
121 ccagcatggg ggcttcgtgg tgactgtcaa gcaagagcgc ggcgagggtc cacgcgcggg
181 cgagaagggg tcccacgagg aggagccggt gaagaaacgc ggctggccca agggcaagaa
241 gcggaagaag attctgccga atgggcccaa ggcaccggtc acgggctacg tgcgcttcct
301 gaacgagcgg cgcgagcaga tccgcacgcg ccacccggat ctgccctttc ccgagatcac
361 caagatgctg ggcgccgagt ggagcaagct gcagccaacg gaaaagcagc ggtacctgga
421 tgaggccgag agagagaagc agcagtacat gaaggagctg cgggcgtacc agcagtctga
481 agcctataag atgtgcacgg agaagatcca ggagaagaag atcaagaaag aagactcgag
541 ctctgggctc atgaacactc tcctgaatgg acacaagggt ggggactgcg atggcttctc
601 caccttcgat gttcccatct tcactgaaga gttcttggac caaaacaaag cgcgtgaggc
661 ggagcttcgg cgcttgcgga agatgaatgt ggccttcgag gagcagaacg cggtactgca
721 gaggcacacg cagagcatga gcagcgcgcg cgagcgtctg gagcaggagc tggcgctgga
781 ggagcggagg acgctggcgc tgcagcagca gctccaggcc gtgcgccagg cgctcaccgc
841 cagcttcgcc tcactgccgg tgccgggcac gggcgaaacg cccacgctgg gcactctgga
901 cttctacatg gcccggcttc acggagccat cgagcgcgac cccgcccagc acgagaagct
961 catcgtccgc atcaaggaaa tcctggccca ggtcgccagc gagcacctgt gaggagtggg
1021 cgggcccacg atgcagagga gaagctgtgg gcgcggccct gccacacccc accccgtgga
1081 cgagaggctg ggggtccacc ctttggggcc tggtcccatc ctgcaccttg ggggctccag
1141 cccccctaaa attaaatttc tgcagcatcc ctttagcttt caatctcccc agccccctga
1201 acccggaaaa agcactcgct gcgcgataca cccagaagaa cctcacagcc gagggtgccc
1261 ctcctcggag gacagccacg cgctacactg gctccttctc actgctggat ccggactttt
1321 taaataaaaa caagtaaaat ttgtgtttta aaaaaaaaaa aaaaaaaaaa aaaaaa
//