LOCUS BC002500 1871 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens calreticulin, mRNA (cDNA clone MGC:2227 IMAGE:3050717), complete cds. ACCESSION BC002500 VERSION BC002500.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1871) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1871) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Oct 8, 2003 this sequence version replaced BC002500.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 4 Row: g Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 5921996. FEATURES Location/Qualifiers source 1..1871 /db_xref="H-InvDB:HIT000030944" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:2227 IMAGE:3050717" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1871 /gene="CALR" /gene_synonym="cC1qR" /gene_synonym="RO" /gene_synonym="SSA" /db_xref="GeneID:811" /db_xref="HGNC:HGNC:1455" /db_xref="MIM:109091" CDS 34..1287 /gene="CALR" /gene_synonym="cC1qR" /gene_synonym="RO" /gene_synonym="SSA" /codon_start=1 /product="calreticulin" /protein_id="AAH02500.1" /db_xref="GeneID:811" /db_xref="HGNC:HGNC:1455" /db_xref="MIM:109091" /translation="MLLSVPLLLGLLGLAVAEPAVYFKEQFLDGDGWTSRWIESKHKS DFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQN IDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKD IRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPED WDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWK PRQIDNPDYKGTWIHPEIDNPEYSPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITN DEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKEEEEDKKRKEEEEAEDKEDDEDKD EDEEDEEDKEEDEEEDVPGQAKDEL" BASE COUNT 480 a 487 c 508 g 396 t ORIGIN 1 agggcccgcg cgttgccgcc ccctcggccc gccatgctgc tatccgtgcc gctgctgctc 61 ggcctcctcg gcctggccgt cgccgagcct gccgtctact tcaaggagca gtttctggac 121 ggagacgggt ggacttcccg ctggatcgaa tccaaacaca agtcagattt tggcaaattc 181 gttctcagtt ccggcaagtt ctacggtgac gaggagaaag ataaaggttt gcagacaagc 241 caggatgcac gcttttatgc tctgtcggcc agtttcgagc ctttcagcaa caaaggccag 301 acgctggtgg tgcagttcac ggtgaaacat gagcagaaca tcgactgtgg gggcggctat 361 gtgaagctgt ttcctaatag tttggaccag acagacatgc acggagactc agaatacaac 421 atcatgtttg gtcccgacat ctgtggccct ggcaccaaga aggttcatgt catcttcaac 481 tacaagggca agaacgtgct gatcaacaag gacatccgtt gcaaggatga tgagtttaca 541 cacctgtaca cactgattgt gcggccagac aacacctatg aggtgaagat tgacaacagc 601 caggtggagt ccggctcctt ggaagacgat tgggacttcc tgccacccaa gaagataaag 661 gatcctgatg cttcaaaacc ggaagactgg gatgagcggg ccaagatcga tgatcccaca 721 gactccaagc ctgaggactg ggacaagccc gagcatatcc ctgaccctga tgctaagaag 781 cccgaggact gggatgaaga gatggacgga gagtgggaac ccccagtgat tcagaaccct 841 gagtacaagg gtgagtggaa gccccggcag atcgacaacc cagattacaa gggcacttgg 901 atccacccag aaattgacaa ccccgagtat tctcccgatc ccagtatcta tgcctatgat 961 aactttggcg tgctgggcct ggacctctgg caggtcaagt ctggcaccat ctttgacaac 1021 ttcctcatca ccaacgatga ggcatacgct gaggagtttg gcaacgagac gtggggcgta 1081 acaaaggcag cagagaaaca aatgaaggac aaacaggacg aggagcagag gcttaaggag 1141 gaggaagaag acaagaaacg caaagaggag gaggaggcag aggacaagga ggatgatgag 1201 gacaaagatg aggatgagga ggatgaggag gacaaggagg aagatgagga ggaagatgtc 1261 cccggccagg ccaaggacga gctgtagaga ggcctgcctc cagggctgga ctgaggcctg 1321 agcgctcctg ccgcagagct tgccgcgcca aataatgtct ctgtgagact cgagaacttt 1381 catttttttc caggctggtt cggatttggg gtggattttg gttttgttcc cctcctccac 1441 tctcccccac cccctccccg cccttttttt tttttttttt aaactggtat tttatctttg 1501 attctccttc agccctcacc cctggttctc atctttcttg atcaacatct tttcttgcct 1561 ctgtcccctt ctctcatctc ttagctcccc tccaacctgg ggggcagtgg tgtggagaag 1621 ccacaggcct gagatttcat ctgctctcct tcctggagcc cagaggaggg cagcagaagg 1681 gggtggtgtc tccaaccccc cagcactgag gaagaacggg gctcttctca tttcacccct 1741 ccctttctcc cctgccccca ggactgggcc acttctgggt ggggcagtgg gtcccagatt 1801 ggctcacact gagaatgtaa gaactacaaa caaaatttct attaaaaaaa aaaaaaaaaa 1861 aaaaaaaaaa a //