LOCUS BC002500 1871 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calreticulin, mRNA (cDNA clone MGC:2227
IMAGE:3050717), complete cds.
ACCESSION BC002500
VERSION BC002500.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1871)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1871)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 8, 2003 this sequence version replaced BC002500.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: g Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5921996.
FEATURES Location/Qualifiers
source 1..1871
/db_xref="H-InvDB:HIT000030944"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2227 IMAGE:3050717"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1871
/gene="CALR"
/gene_synonym="cC1qR"
/gene_synonym="RO"
/gene_synonym="SSA"
/db_xref="GeneID:811"
/db_xref="HGNC:HGNC:1455"
/db_xref="MIM:109091"
CDS 34..1287
/gene="CALR"
/gene_synonym="cC1qR"
/gene_synonym="RO"
/gene_synonym="SSA"
/codon_start=1
/product="calreticulin"
/protein_id="AAH02500.1"
/db_xref="GeneID:811"
/db_xref="HGNC:HGNC:1455"
/db_xref="MIM:109091"
/translation="MLLSVPLLLGLLGLAVAEPAVYFKEQFLDGDGWTSRWIESKHKS
DFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQN
IDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKD
IRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPED
WDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWK
PRQIDNPDYKGTWIHPEIDNPEYSPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITN
DEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKEEEEDKKRKEEEEAEDKEDDEDKD
EDEEDEEDKEEDEEEDVPGQAKDEL"
BASE COUNT 480 a 487 c 508 g 396 t
ORIGIN
1 agggcccgcg cgttgccgcc ccctcggccc gccatgctgc tatccgtgcc gctgctgctc
61 ggcctcctcg gcctggccgt cgccgagcct gccgtctact tcaaggagca gtttctggac
121 ggagacgggt ggacttcccg ctggatcgaa tccaaacaca agtcagattt tggcaaattc
181 gttctcagtt ccggcaagtt ctacggtgac gaggagaaag ataaaggttt gcagacaagc
241 caggatgcac gcttttatgc tctgtcggcc agtttcgagc ctttcagcaa caaaggccag
301 acgctggtgg tgcagttcac ggtgaaacat gagcagaaca tcgactgtgg gggcggctat
361 gtgaagctgt ttcctaatag tttggaccag acagacatgc acggagactc agaatacaac
421 atcatgtttg gtcccgacat ctgtggccct ggcaccaaga aggttcatgt catcttcaac
481 tacaagggca agaacgtgct gatcaacaag gacatccgtt gcaaggatga tgagtttaca
541 cacctgtaca cactgattgt gcggccagac aacacctatg aggtgaagat tgacaacagc
601 caggtggagt ccggctcctt ggaagacgat tgggacttcc tgccacccaa gaagataaag
661 gatcctgatg cttcaaaacc ggaagactgg gatgagcggg ccaagatcga tgatcccaca
721 gactccaagc ctgaggactg ggacaagccc gagcatatcc ctgaccctga tgctaagaag
781 cccgaggact gggatgaaga gatggacgga gagtgggaac ccccagtgat tcagaaccct
841 gagtacaagg gtgagtggaa gccccggcag atcgacaacc cagattacaa gggcacttgg
901 atccacccag aaattgacaa ccccgagtat tctcccgatc ccagtatcta tgcctatgat
961 aactttggcg tgctgggcct ggacctctgg caggtcaagt ctggcaccat ctttgacaac
1021 ttcctcatca ccaacgatga ggcatacgct gaggagtttg gcaacgagac gtggggcgta
1081 acaaaggcag cagagaaaca aatgaaggac aaacaggacg aggagcagag gcttaaggag
1141 gaggaagaag acaagaaacg caaagaggag gaggaggcag aggacaagga ggatgatgag
1201 gacaaagatg aggatgagga ggatgaggag gacaaggagg aagatgagga ggaagatgtc
1261 cccggccagg ccaaggacga gctgtagaga ggcctgcctc cagggctgga ctgaggcctg
1321 agcgctcctg ccgcagagct tgccgcgcca aataatgtct ctgtgagact cgagaacttt
1381 catttttttc caggctggtt cggatttggg gtggattttg gttttgttcc cctcctccac
1441 tctcccccac cccctccccg cccttttttt tttttttttt aaactggtat tttatctttg
1501 attctccttc agccctcacc cctggttctc atctttcttg atcaacatct tttcttgcct
1561 ctgtcccctt ctctcatctc ttagctcccc tccaacctgg ggggcagtgg tgtggagaag
1621 ccacaggcct gagatttcat ctgctctcct tcctggagcc cagaggaggg cagcagaagg
1681 gggtggtgtc tccaaccccc cagcactgag gaagaacggg gctcttctca tttcacccct
1741 ccctttctcc cctgccccca ggactgggcc acttctgggt ggggcagtgg gtcccagatt
1801 ggctcacact gagaatgtaa gaactacaaa caaaatttct attaaaaaaa aaaaaaaaaa
1861 aaaaaaaaaa a
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