LOCUS BC000592 1403 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:1790 IMAGE:3347146), complete cds. ACCESSION BC000592 VERSION BC000592.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1403) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1403) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC000592.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 5 Row: a Column: 20. FEATURES Location/Qualifiers source 1..1403 /db_xref="H-InvDB:HIT000029759" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:1790 IMAGE:3347146" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1403 /gene="CAPNS1" /gene_synonym="30K" /gene_synonym="CALPAIN4" /gene_synonym="CANP" /gene_synonym="CANPS" /gene_synonym="CDPS" /db_xref="GeneID:826" /db_xref="HGNC:HGNC:1481" /db_xref="MIM:114170" CDS 66..872 /gene="CAPNS1" /gene_synonym="30K" /gene_synonym="CALPAIN4" /gene_synonym="CANP" /gene_synonym="CANPS" /gene_synonym="CDPS" /codon_start=1 /product="calpain, small subunit 1" /protein_id="AAH00592.1" /db_xref="GeneID:826" /db_xref="HGNC:HGNC:1481" /db_xref="MIM:114170" /translation="MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGG GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFR RLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG FEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS" BASE COUNT 301 a 423 c 400 g 279 t ORIGIN 1 cccgggagcg gcagtggaac cgactcccag aactccggac gtgtgcggcg cagtgagtcg 61 cagccatgtt cctggttaac tcgttcttga agggcggcgg cggcggcggc gggggaggcg 121 ggggcctggg tgggggcctg ggaaatgtgc ttggaggcct gatcagcggg gccgggggcg 181 gcggcggcgg cggcggcggc ggcggcggtg gtggaggcgg cggtggcggt ggaacggcca 241 tgcgcatcct aggcggagtc atcagcgcca tcagcgaggc ggctgcgcag tacaacccgg 301 agcccccgcc cccacgcaca cattactcca acattgaggc caacgagagt gaggaggtcc 361 ggcagttccg gagactcttt gcccagctgg ctggagatga catggaggtc agcgccacag 421 aactcatgaa cattctcaat aaggttgtga cacgacaccc tgatctgaag actgatggtt 481 ttggcattga cacatgtcgc agcatggtgg ccgtgatgga tagcgacacc acaggcaagc 541 tgggctttga ggaattcaag tacttgtgga acaacatcaa aaggtggcag gccatataca 601 aacagttcga cactgaccga tcagggacca tttgcagtag tgaactccca ggtgcctttg 661 aggcagcagg gttccacctg aatgagcatc tctataacat gatcatccga cgctactcag 721 atgaaagtgg gaacatggat tttgacaact tcatcagctg cttggtcagg ctggacgcca 781 tgttccgtgc cttcaaatct cttgacaaag atggcactgg acaaatccag gtgaacatcc 841 aggagtggct gcagctgact atgtattcct gaactggagc cccagacccg ccccctcacc 901 gccttgctat aggagtcacc tggagcctcg gtctctccca gggccgatcc tgtctgcagt 961 cacatctttg tggggcctgc tgacccacaa gcttttgttc tctcagtact tgttacccag 1021 cttctcaaca tccagggccc aatttgccct gcctggagtt ccccctggct ctaggacact 1081 ctaacaagct ctgtccacgg gtctccccat tcccaccagg ccctgcacac acccactccg 1141 taacctctcc cctgtacctg tgccaagcct agcacttgtg atgcctccat gccccgaggg 1201 ccctctctca gttctgggag gatgactcca gtccctgcac gccctggcac acccttcacg 1261 gttgctaccc aggcggccaa gctccagacc gtgccagacc caggtgcccc agtgcctttg 1321 tctatattct gctcccagcc tgccaggccc aggaggaaat aaacatgccc cagttgctga 1381 tctctaaaaa aaaaaaaaaa aaa //