LOCUS BC000592 1403 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:1790
IMAGE:3347146), complete cds.
ACCESSION BC000592
VERSION BC000592.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1403)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1403)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000592.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: a Column: 20.
FEATURES Location/Qualifiers
source 1..1403
/db_xref="H-InvDB:HIT000029759"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1790 IMAGE:3347146"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1403
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CALPAIN4"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CDPS"
/db_xref="GeneID:826"
/db_xref="HGNC:HGNC:1481"
/db_xref="MIM:114170"
CDS 66..872
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CALPAIN4"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CDPS"
/codon_start=1
/product="calpain, small subunit 1"
/protein_id="AAH00592.1"
/db_xref="GeneID:826"
/db_xref="HGNC:HGNC:1481"
/db_xref="MIM:114170"
/translation="MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGG
GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFR
RLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG
FEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS
DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS"
BASE COUNT 301 a 423 c 400 g 279 t
ORIGIN
1 cccgggagcg gcagtggaac cgactcccag aactccggac gtgtgcggcg cagtgagtcg
61 cagccatgtt cctggttaac tcgttcttga agggcggcgg cggcggcggc gggggaggcg
121 ggggcctggg tgggggcctg ggaaatgtgc ttggaggcct gatcagcggg gccgggggcg
181 gcggcggcgg cggcggcggc ggcggcggtg gtggaggcgg cggtggcggt ggaacggcca
241 tgcgcatcct aggcggagtc atcagcgcca tcagcgaggc ggctgcgcag tacaacccgg
301 agcccccgcc cccacgcaca cattactcca acattgaggc caacgagagt gaggaggtcc
361 ggcagttccg gagactcttt gcccagctgg ctggagatga catggaggtc agcgccacag
421 aactcatgaa cattctcaat aaggttgtga cacgacaccc tgatctgaag actgatggtt
481 ttggcattga cacatgtcgc agcatggtgg ccgtgatgga tagcgacacc acaggcaagc
541 tgggctttga ggaattcaag tacttgtgga acaacatcaa aaggtggcag gccatataca
601 aacagttcga cactgaccga tcagggacca tttgcagtag tgaactccca ggtgcctttg
661 aggcagcagg gttccacctg aatgagcatc tctataacat gatcatccga cgctactcag
721 atgaaagtgg gaacatggat tttgacaact tcatcagctg cttggtcagg ctggacgcca
781 tgttccgtgc cttcaaatct cttgacaaag atggcactgg acaaatccag gtgaacatcc
841 aggagtggct gcagctgact atgtattcct gaactggagc cccagacccg ccccctcacc
901 gccttgctat aggagtcacc tggagcctcg gtctctccca gggccgatcc tgtctgcagt
961 cacatctttg tggggcctgc tgacccacaa gcttttgttc tctcagtact tgttacccag
1021 cttctcaaca tccagggccc aatttgccct gcctggagtt ccccctggct ctaggacact
1081 ctaacaagct ctgtccacgg gtctccccat tcccaccagg ccctgcacac acccactccg
1141 taacctctcc cctgtacctg tgccaagcct agcacttgtg atgcctccat gccccgaggg
1201 ccctctctca gttctgggag gatgactcca gtccctgcac gccctggcac acccttcacg
1261 gttgctaccc aggcggccaa gctccagacc gtgccagacc caggtgcccc agtgcctttg
1321 tctatattct gctcccagcc tgccaggccc aggaggaaat aaacatgccc cagttgctga
1381 tctctaaaaa aaaaaaaaaa aaa
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