LOCUS       JO311409                 644 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c44425_c mRNA sequence.
ACCESSION   JO311409
VERSION     JO311409.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          163 a          116 c          179 g          164 t
ORIGIN      
        1 ttacatcacg acgaacgatg gccgtacgat tcgttatcct gaccctctta ttaaggcgaa
       61 tgacaccatc aaagttgata tcgagacggg cagaccgacc gagttcgtga aattcgatgt
      121 gggtaacatt tgcatggtca mtksysggcg aaacagggga cgagtrggag ttattcaaca
      181 cagggagaag cataagggaa gtttcgacat cattcacgtt aaagacgcgg ctggwcatca
      241 attcgcgacg agaatgggga atgtgttcgt mattggmcar ggaacaaaag cgtgggtttc
      301 tcttccmagg agcagaggta ttaagctgws satcgtcgag gagatgagga aggcaaggac
      361 gggsacsaag gttgcygcct aarattgaaa ttgttgtaat cttcacratg aggtsacagk
      421 gagcggcgag tttccgcgta gcggcatgac ttttgtagtg acatgcttga aggtttaayg
      481 agaggggtgt gtgcgatctt ggagattaat attcagtcaa ggtgcactct tgattttgtg
      541 aaacggcaac tcttcacctt tctcgatgct tgctgaagga ttgatgagtg ggtgttcaat
      601 cttctcagcc atctctctgg ttatctagac tcgctgtgaa ttcg
//