LOCUS JO308227 1031 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c39321_c mRNA sequence. ACCESSION JO308227 VERSION JO308227.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 1031) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1031) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1031 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 294 a 304 c 180 g 253 t ORIGIN 1 tcctaggatt tctttgattc gacctacgat ttcaatcgaa ctcaagtcaa tgacgtcgga 61 atcgacagat ctactccatg ctcgtcacag atagaatcat ctggattcaa cagacttcac 121 ctagcacaat ccctattcaa tgatcctttc ctgcagagaa gcatacacct caatcaagtg 181 gtgacttcta cgctctatca tctaagtggg cctccttaaa tgagacagta aaaacccctt 241 caaaccttga ctgcgctgaa acttgcacct tgtaaacagc agcagcatac aactctgatc 301 ttactgcttc tgcaagagaa aaagtgaacc tagtcaccta caccgactaa aatcactccc 361 tccatgatgg gaggaaaaga aagaccaata catacaccac cttctctcgc ccatcacggt 421 tgttatgcta cataaggcag taatcagaca ttttgcaacc ttctcccctc aaaggccgag 481 cctccttatt gttcccttac tctatcttcc cgcgactaat ttgacactcg cacaacgaag 541 cccagaccct agttggcata cagtgcccgg tgaccaatag ccgattgtcg accaccaatt 601 gctgcacacc tttaaggtca acagaagacg gccgcggtca aactgaagca tttccaacaa 661 gtacgcagag atcccttgac caccaacacc gacattcaca gccaatctca acaatcagga 721 acccccatca accaactcgc agtcaatagg caaagctgcg cgtaacacca ccctctcctc 781 caaagatgct tgttgatctt aaccgcccct ccgaagatgc tagctgatcc tgaggtgtgt 841 gaaggagcgt gaggagaccg ttggatgctt tttccgaaga cgcacactct cccttcactt 901 cttcaccttc ttgccgaatt cgatccttca ctccatgtgg aaatttttta tcataaaata 961 gtacagggtt ctgagccaaa cgcttctctt cctgggaaac aacaactgag gtgatccatt 1021 tcttagttcc a //