LOCUS       JO308227                1031 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c39321_c mRNA sequence.
ACCESSION   JO308227
VERSION     JO308227.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          294 a          304 c          180 g          253 t
ORIGIN      
        1 tcctaggatt tctttgattc gacctacgat ttcaatcgaa ctcaagtcaa tgacgtcgga
       61 atcgacagat ctactccatg ctcgtcacag atagaatcat ctggattcaa cagacttcac
      121 ctagcacaat ccctattcaa tgatcctttc ctgcagagaa gcatacacct caatcaagtg
      181 gtgacttcta cgctctatca tctaagtggg cctccttaaa tgagacagta aaaacccctt
      241 caaaccttga ctgcgctgaa acttgcacct tgtaaacagc agcagcatac aactctgatc
      301 ttactgcttc tgcaagagaa aaagtgaacc tagtcaccta caccgactaa aatcactccc
      361 tccatgatgg gaggaaaaga aagaccaata catacaccac cttctctcgc ccatcacggt
      421 tgttatgcta cataaggcag taatcagaca ttttgcaacc ttctcccctc aaaggccgag
      481 cctccttatt gttcccttac tctatcttcc cgcgactaat ttgacactcg cacaacgaag
      541 cccagaccct agttggcata cagtgcccgg tgaccaatag ccgattgtcg accaccaatt
      601 gctgcacacc tttaaggtca acagaagacg gccgcggtca aactgaagca tttccaacaa
      661 gtacgcagag atcccttgac caccaacacc gacattcaca gccaatctca acaatcagga
      721 acccccatca accaactcgc agtcaatagg caaagctgcg cgtaacacca ccctctcctc
      781 caaagatgct tgttgatctt aaccgcccct ccgaagatgc tagctgatcc tgaggtgtgt
      841 gaaggagcgt gaggagaccg ttggatgctt tttccgaaga cgcacactct cccttcactt
      901 cttcaccttc ttgccgaatt cgatccttca ctccatgtgg aaatttttta tcataaaata
      961 gtacagggtt ctgagccaaa cgcttctctt cctgggaaac aacaactgag gtgatccatt
     1021 tcttagttcc a
//