LOCUS       JO216475                 643 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c11629_c mRNA sequence.
ACCESSION   JO216475
VERSION     JO216475.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnematophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          124 a          203 c          187 g          129 t
ORIGIN      
        1 tctcctcgtg gtgtgagggg tggtcctgtg ccgctgccag ggctaactgg cccggtttca
       61 actttgagct caacgtcaga ttcttgcgca gacgaagagc gtcggagaga gacaacccct
      121 cttcttcttc ttcttctccc gtggagggaa gggcgcctgg cgctgagtcg ggagtgctgc
      181 agtggaaaga gtccatgtga tcgagggagc tgccaatgag gctggggtgc agttgcgtgt
      241 tgggtgcaga ttgcgacctc tcctcaagaa gcatagactg ctgagctgtc agtgccccat
      301 ctgacgccac gtcacccatg ccaagctgtg atgacgtggg atgcgaagca gacctcgcca
      361 caagccccac ttcagaacag ccggcacgca tgcattcgtc agcgccgttc tggcccagag
      421 ctggtcccgc agctgagggt ccaggtagcc ttccaagaag tttctccagc aacccggccc
      481 cagagggatc catgagatac gcaaccgcct cttcccttct caaccatccc gggaattccc
      541 agcaccagag cttcgccctc agccgccttc ctggcagctt cctcctcgca aggctggcag
      601 ccagacaggc cgtgtgcagc gcaactacgg catcccggga att
//