LOCUS HO631628 1369 bp mRNA linear EST 19-JAN-2012
DEFINITION penium_71836_c11495_c Penium margaritaceum EST library Penium
margaritaceum cDNA 5', mRNA sequence.
ACCESSION HO631628
VERSION HO631628.1
DBLINK BioSample: SAMN00169693
KEYWORDS EST.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnematophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 1369)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1369
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD-2004, CL-18"
/db_xref="taxon:102169"
/clone_lib="SAMN00169693 Penium margaritaceum EST library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 305 a 422 c 394 g 247 t
ORIGIN
1 cagaagcacg aagcagacat gtatgcgttt cgttgtggtc cgtagcatcc tacacattga
61 ccaacactga ggaggtatgt cactggtcct gccaccaact gaccgcgcaa ggtagagtag
121 tttagagtga ttcgggactg aggcactgta gcaacatggg cactgtacat gggtgagaca
181 caaaaccttc cagagtccca atgtccttcc acagcctccc cactgcagac aatggaggcg
241 gtgagtggtg gtgaccttct tgcgaacact actgagtggt cgctgcatcc tgtaactcga
301 tggcacatgg ccagctgcct gcctttcaca gcatgtaggc cgatctgtgt gcagtcgtgc
361 atccacacag ccgcagaaaa cactcagatg cagcagaatc acagaagcgc cgacaggaaa
421 gagaagatgc cgaggttggc ggtgtccctc acgatgagga acacaccggc agtaagcagc
481 gccagcagcc ccgatgacat gattgccttc tccgcctcat ctggaagctt cttgccaccc
541 cgcagacctt ccaccagaag cagagccaaa aagccaccgt cgagagccgg cagcggcagc
601 gcatttacca cagccaggtt caaattcacg atggccgcga attggaacag ggcaggggca
661 ctggttctcg ccacctccgc accgaccgca acgatggcga caggaccgga gagccgctct
721 gaggcgcggc cgaagtcaga caccagctgg ttcagcccgt ccacaacgag cgaaccgagc
781 cgcacgagct cccctcctgc tagcgacagt gcttggacgg ggttgctagc tcggatgctc
841 acttgctctg cgtgtggggc cagctccacc cctatccggc cagagccgtc ggaagagaga
901 gctggacgga ccttcacagt aacctcttct cctccccgct gcaccagcag gtcaacaggt
961 gcgccagcac tggccttgat ggttgcaact aggtcaccca ctgcggactc cgaagcaggg
1021 agggttctgc cagcgacagc aatgacgata tcgccgtcac gcaggccgga cctatctcct
1081 gcactgcctg gaacgacgtg ggggatctcc actcccccaa gcggccgttg ctgaatgatg
1141 cccaccgtgt tcacctgggt gaacagcagc gcgtacgcaa acacaaggtt ggcgatgacc
1201 cctgccgaga tgacaatggc gcggtcgagg atgggccggt tcttcagcag gtctgggtcg
1261 tccacaggga tcgttcacct csgggtcctc tgtggggtct gggaacgcca cgtagcctcc
1321 cagtggaatg gctcgcagag agtactccac tgtgtttgct tcaactgcg
//