LOCUS HO586459 811 bp mRNA linear EST 20-JAN-2012
DEFINITION penium_71836_c57922_c Penium margaritaceum EST library Penium
margaritaceum cDNA 5', mRNA sequence.
ACCESSION HO586459
VERSION HO586459.1
DBLINK BioSample: SAMN00169693
KEYWORDS EST.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnematophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 811)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..811
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD-2004, CL-18"
/db_xref="taxon:102169"
/clone_lib="SAMN00169693 Penium margaritaceum EST library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 166 a 219 c 272 g 154 t
ORIGIN
1 cgggatccgc ttgcaacgca gcgcactcta tccctctctg aaatccctcc tttaccccga
61 cggcttctct ttccgcgacg cccctcctcc ttcttcaggt ctctcccgat agaactccgt
121 ccggtcggcg tcgtggtctc ggggactcgc tggtgacgca agccggcgag aaaaacaatc
181 tatggcgcac gcgcaacctg ggcagggagg cgagcgaggc ggtgcaggag ctcaagctgg
241 cggagcggcg gggcggggag gggtgggagc gagccgtgat tgagggcagc gtggcgaggc
301 tgctgaaggc ggacgtgctg ctggtgctgg aacagctcca gcggcaggag cggtggcggc
361 tggcgctgtt ggtgtttgcc cacatcgtcg agcacgagcc atggtacaaa ccgcaccaca
421 aggagagcca ccaactcgtc tcgcgcatca tcaactgcgt cgggaagagc ggccagccag
481 acctcgcccg cagcgtgctt gacgacctgc tgcagcgcgg aaaggcgcag cggtcctccg
541 ctgtgcttac ttcgctagta ggagcctact gccgcgttgg cgactacagg cgagggattg
601 aagttctgga cgagatgaag gcggagcaaa tttctccgtt ggacatggca taccatttgt
661 tgataaagac gtgcgaaagc catggtgcgg aagaggtggc acagaggttg agggaggaac
721 gggctgaatt aaatcgcacc attgtttttg cggaaaagaa acctcacatc tcgaggaggt
781 tttaatggct tgtaaagagg gcgttgaatt t
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