LOCUS DF973767 245607 bp DNA linear CON 02-DEC-2021
DEFINITION Trifolium subterraneum DNA, scaffold: Tsud_sc00517.00.
ACCESSION DF973767 BCLP01000000
VERSION DF973767.1
DBLINK BioProject:PRJDB2012
Sequence Read Archive:DRR018263, DRR018264, DRR032035, DRR032036,
DRR032037, DRR032038, DRR032039, DRR032040, DRR032041, DRR032042,
DRR032043
BioSample:SAMD00004201
KEYWORDS WGS; IMPROVED_HIGH_QUALITY_DRAFT.
SOURCE Trifolium subterraneum
ORGANISM Trifolium subterraneum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae;
50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade;
Trifolieae; Trifolium.
REFERENCE 1 (bases 1 to 245607)
AUTHORS Isobe,S.
TITLE Direct Submission
JOURNAL Submitted (09-NOV-2015)
Contact:Sachiko Isobe
Kazusa DNA Research Institute, Dept. of Plant Genome and Genetics;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
REFERENCE 2
AUTHORS Hirakawa,H., Kaur,P., Shirasawa,K., Nichols,P., Nagano,S.,
Appels,R., Erskine,W. and Isobe,S.N.
TITLE Draft genome sequence of subterranean clover, a reference for
genus Trifolium
JOURNAL Sci Rep 6, 30358 (2016)
REMARK Publication Status: Online-Only
DOI:10.1038/srep30358
COMMENT URL:http://clovergarden.jp/
##Genome-Assembly-Data-START##
Assembly Method :: SOAPdenovo v. 2; Newbler v. 2.7; GAM-NGS;
SSPACE
Assembly Name :: TSUd_r1.1
Genome Coverage :: 552.8x
Sequencing Technology :: HiSeq1000; Hiseq2000; Miseq; Roche454
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..245607
/cultivar="Daliak"
/db_xref="taxon:3900"
/mol_type="genomic DNA"
/note="scaffold: Tsud_sc00517.00"
/organism="Trifolium subterraneum"
CDS complement(3740..4048)
/codon_start=1
/locus_tag="TSUD_37850"
/note="Tsud_chr1.g37860.1.au"
/product="hypothetical protein"
/protein_id="GAU39532.1"
/transl_table=1
/translation="MDRVKDLASKKAAVIFTKSSCYMCHSITQLFYELGASPAVHELD
NEPYGREMERALRSLGCNPSVPAVFIGGKFVGSSKDVISLHVDGSLKQMLMAARAIWF
"
CDS complement(join(13353..13508,14487..14669))
/codon_start=1
/locus_tag="TSUD_37860"
/note="Tsud_chr1.g37870.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU39533.1"
/transl_table=1
/translation="MVIDFRENHGETWCWTFSWRRDLFHWEVDLVARLREILDPVVFS
LEDDFWSWRSDSDGVFSARNRSIFANGSFIPLVIVDEIKVMSWKWCLARMKVSPCLFY
EWNPGDCLNH"
CDS complement(join(16027..16563,17042..18211,18346..18456))
/codon_start=1
/locus_tag="TSUD_37870"
/note="Tsud_chr1.g37880.1.sm.mkhc"
/product="hypothetical protein"
/protein_id="GAU39534.1"
/transl_table=1
/translation="MSSISNYSARFVHYRPISDVSSDLTIEVGASSFALHKFPLVSRS
GRIRKLLLESRDSKVSRISLPSVPGGAEAFELGAKFCYGINIEITLSNVAMLRCIAHF
LEMTEDFAEKNLLTRAESYLKETVLSNTANTIFVLHRCETLLPFSEEINLVNRLINAI
SSNVCKEELTSGLQKLDYNFPSKTIEPETPSQWWGKSLTVLNLDFFKRVLSTMKSKGL
KQEIIGKILINYAHNSLQVIKGSLLDLEVLKNQRILVETITSLLPTQSRKSQVPIAFL
SSLLKSAIATSASTSCRSDLERRIGLQLDQAILEDILIPTSSYQNNNRSSTIYDIDSI
VRIFSTFLNLDEQDEDDSQLRDENEMVYDFDSPGSPKQSSILKVSKLLDNYLAEVALD
PNMFPSKFISLAELLPDHARIVSDGLYRAVDIFLKVHPNIKESERYRLCKTIDCQKLS
QEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGGHNQLLFGGLNGQFPQRSGSGA
GSGAMSPRDNYASVRRENRELKLEVTRMRMRLTDLEKDHVSMKQELVKSHPANKLFKS
FTKKLSKLNALFRINGIKTNGVGSERRFPFPKRRRHSVS"
CDS complement(join(24027..24085,24182..24467))
/codon_start=1
/locus_tag="TSUD_37880"
/note="Tsud_chr1.g37890.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU39535.1"
/transl_table=1
/translation="MGICRDEMEEEYSPKWGMRTENILDGEVKNHPLNPRSMDIPSNN
HVPAVAITTSYSNIYYVFNGDKIFKPVFAELIKNTNLELVILNQESTSFFQVQNRMDV
FAKSVACQHYHE"
CDS complement(join(26773..27005,27071..27101))
/codon_start=1
/locus_tag="TSUD_37890"
/note="Tsud_chr1.g37900.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU39536.1"
/transl_table=1
/translation="MGAASLARCAIAPYPIGSLLSNLVPSTTYSAFRPELKSTYPARM
HSSGNGSGTSVGLIFSQGGSVSLSDAQLSSQSSASLNGSRSSR"
CDS complement(join(28237..28260,28605..28916,29018..29149,
29402..29521,29680..29742,30138..30280,30382..30478))
/codon_start=1
/locus_tag="TSUD_37900"
/note="Tsud_chr1.g37910.1.sm.mkhc"
/product="hypothetical protein"
/protein_id="GAU39537.1"
/transl_table=1
/translation="MDLYGRSPTRNGSNPLNQHEWRSPTADTTALGESMWHLTIGGGE
SYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQY
YLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPFGGASPSLRVARPPVLPGS
YVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAF
ARPYTPLPSSPGPAGSSLQEKVFPERPGEPVCQYYLRTGDCKFGLACRYHHPQDQGVA
RPLLSPIGLPLRPDYTTLDN"
assembly_gap 33036..33176
/estimated_length=141
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS join(35152..35496,35592..35661,36373..36470,36632..36786,
37534..37649,39155..39251,39674..39758,39983..40045,
40151..40256,40773..40918,41491..41579,41666..41783)
/codon_start=1
/locus_tag="TSUD_37910"
/note="Tsud_chr1.g37920.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU39538.1"
/transl_table=1
/translation="MGFRFNNLNPIYRTCITRLSSSKFLPPPTEPLNFHQSENSFISP
QNPAFKIPSRWHFGHSHDHDHHHPKHLNEGENIFRLGLAADIALATGKALTGYVSGST
AIIADAAHSISDVVLSGIALVSFKLAKAPRDKEHPYGHGKFETLGALGISCMLFATGG
GIAWHAVDLLTGLLSAGPEIVTQAMAHEHVHNHGHGGHHHGIDMEHPILALNMTLVSI
GVKEGLYWITKQAGERQGSGLMKANAWHHRADAISSVVALFGVGGSILGVKFLDPLAG
LFVSVMILKAGAESGYQSILELVDAAIPAQHLDPIKQTILQVNGVKGCHRLRGRRAGS
YLYLDVNIEVDPFSSVSSAHDIGENVRRQIHKSHPTVTEMFIHIDPAMSHACPSTTDE
QDSWSGDMDQDSIAPAGDSNIEGIVSGIISANFPQMSVERITRHMFQSKIVLQIEVSM
LPDIPIRHAMEMAEKAEREILKETSNITHVGIQLRLGRPFPHTSH"
CDS complement(51863..52378)
/codon_start=1
/locus_tag="TSUD_37920"
/note="Tsud_chr1.g37930.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU39539.1"
/transl_table=1
/translation="MGDNNKGKVISNNIEEAFKYNNNNFTSHQDHEVIKEQDRLLPIA
NVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCW
AMTNLGFDDYSEPLKRYLYKYRELDVERGNQNKGNNNNSDEIETYNYDDDKSQTQATN
IRNSGPKSRGF"
assembly_gap 58002..58064
/estimated_length=63
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS join(59053..59703,60799..61015,61366..61492,61648..61738)
/codon_start=1
/locus_tag="TSUD_37930"
/note="Tsud_chr1.g37940.1.am.mk"
/product="hypothetical protein"
/protein_id="GAU39540.1"
/transl_table=1
/translation="MLPNSQSSSLHTLSFNQDHTCFSTSTSTGFRVFACDPLRHLFRR
IFPSGGFNHVEMLFRSNILALVGNGSHPQFPPNKVIIWDDYRGESFGTLIFRTAVRGV
RLRRDMIVVVLESKVYVYNFKDFKVICQVETFSNPKGLCVVSQLDDSMVMVCPGLQKG
QIRVDHYTKKKINYVWAHDSSLACFGLTIDGKFLATASTRGTLIRVFDTENGDLLQEV
RRGANAAEIYSLAFSSTAQWLAVSSDKGTVHVFCLKVNTSNTEIEKSQSSSNSADASI
TSFSSSLSFIKIKGVLPKYFNSKWSFAQFRLHEDCRCTVAFGDQNNTLTILGMDGSFY
RCQFDPVHGGKMTQLESHNFLKPEIAS"
CDS complement(join(61617..61762,61881..61935))
/codon_start=1
/locus_tag="TSUD_37940"
/note="Tsud_chr1.g37950.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU39541.1"
/transl_table=1
/translation="MKLLNPPLTKLLFPSFYQDSSNVSSHLMRLFLVLESYEIQVESS
FHHALGQTDIDRSCTKQSTLDQ"
CDS join(63183..63329,63416..63464,63974..64440)
/codon_start=1
/locus_tag="TSUD_37950"
/note="Tsud_chr1.g37960.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU39542.1"
/transl_table=1
/translation="MALKIYGLAMSTNTTRAMICLHEKEVDFELVPVNVFASEHKQPP
FLNKNPFGLIPVLEDDDLTLFESRAITSYVAEKFKEIGPDLIRHKDIKEASLVKMWTE
VESHYYDPAVSPIIYEYFVAPFQGQEPNKTVIETNMEKLKIVLDVYEAKLSTTKYLAG
DFYSLADLSHISETHYFMQTPCASMINERIHVKAWWEDISSRPAFQKVVGGMTFGQND
QK"
CDS join(65474..65623,65718..65766,65945..66390)
/codon_start=1
/locus_tag="TSUD_37960"
/note="Tsud_chr1.g37970.1.sm.mkhc"
/product="hypothetical protein"
/protein_id="GAU39543.1"
/transl_table=1
/translation="MATIKVHGSPFSVPTMRVIATLYEKQIEFEFVDINLRNGDHKKE
PFISLNPFGQIPAFEDGGLKLFESRAITQYIDDEYGDKGTKLTISDSKKKAIMRLWLE
VESQHYDQVSTKLVWELGLKPLFGIPLDTKIVEENEAKLDSILNVYEKRLSESKYLGG
ESFTLVDLHHLPSLHYLMKSQIKKLFESRPYVSAWVADITARPAWSKVTAMIPN"
CDS join(68192..68242,68430..68478,68972..>69249)
/codon_start=1
/locus_tag="TSUD_37970"
/note="Tsud_chr1.g37980.1.sm.mkhc"
/product="hypothetical protein"
/protein_id="GAU39544.1"
/transl_table=1
/translation="MATIKVQGSPYSTATMRPFGLVPAFEDGDLKLFESRAITQYINH
EYADKGTKLTINDSKKLAIMRMWSEVESLHFDQAASKLVWELGIKPLFGAPLDPKIVE
ENENKLDSILNVYEKRLSESKYLG"
CDS complement(join(70938..70948,71081..71134,71267..71381,
71490..71562,72088..72207,72508..72657,72832..72922,
73087..73171,73684..73821))
/codon_start=1
/locus_tag="TSUD_37980"
/note="Tsud_chr1.g37990.1.au"
/product="hypothetical protein"
/protein_id="GAU39545.1"
/transl_table=1
/translation="MVEDNHPFDDSEVYSFKKILTSNEASTHATGLYIPKEHADRCFP
PLDMTVQPPMQDLVVKDLHGIEWNFRHIYCDHQKAHVLTCGWSTFVNSKKLVSGDSCI
FVRGENGEIGIGIHRATRQYSEMWKTSSPLGAMYVASHAVSARTMFHVQYYPWITPFE
FMIPLKTYVDSIERDYFIGMRVHKLLSAVEQSGRRYGTIVGNEDIDPIRWPGSEWRCI
KVKWDSTPNTFTQHESVCPWWIEPLESPKGFPILPLPNEVIGSSSTYHTVDVDMDMQG
IE"
CDS 75512..75988
/codon_start=1
/locus_tag="TSUD_37990"
/note="Tsud_chr1.g38000.1.au"
/product="hypothetical protein"
/protein_id="GAU39546.1"
/transl_table=1
/translation="MYMLCRRDAAADCGRILRNSNGQWIGGFSRHLESYGAYLAKLWG
VLEGLILARERGITKLEVQVDSIIVVQTLNSTHISSTVGWRLIQEIWQLLELDCWEIR
ICSHSYHEANACADALANMGCDNEPGLCVYEQCTTSLSSLLLKDVMGISTPSVISV"
assembly_gap 83636..84645
/estimated_length=1010
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS 88307..88540
/codon_start=1
/locus_tag="TSUD_38000"
/note="Tsud_chr1.g38010.1.am.mk"
/product="hypothetical protein"
/protein_id="GAU39547.1"
/transl_table=1
/translation="MKPHIHVSSESSPANEFRKPVGEKLHPVDEVDVMTINCDASKQG
RGQTYNQIERRRWSNHAEDPIRTLMFLGSWNHT"
assembly_gap 95423..98259
/estimated_length=2837
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS complement(102444..102863)
/codon_start=1
/locus_tag="TSUD_38010"
/note="Tsud_chr1.g38020.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU39548.1"
/transl_table=1
/translation="MSKKLLEPYDALLVEYTSYADTSSVPGHYVLYWEILHYGLKGDP
LDPKVLQECCIAVEEELDYVYRRCRTNDKSVGPLEICVVEPGTFEALMDLFIAKGASI
NQYKTPRCIKSKKALKLLKSKVMASFFSPRDPKWTLN"
CDS complement(103662..104462)
/codon_start=1
/locus_tag="TSUD_38020"
/note="Tsud_chr1.g38030.1.sm.mkhc"
/product="hypothetical protein"
/protein_id="GAU39549.1"
/transl_table=1
/translation="MYLYFVKAEKSTPCGLPARSVLTSYYKSKHFKCRTHDPWNDFTS
PDQTILCHDINQSMHCQLLAGLIHRRQVLRLGAVFASALLRAISFLERNWKNLCNDIR
NGQLSSFITDPSCCSSMSTLLSSPDPCLADEITKICSQKCWKGILCKLWPKAKYIEAV
VTGSMAQYVPALEHYCEGKLPLVCTMYASSECYFGVNLKPLCDPNDVAFTLLPNMGYY
EFIPLGHNGTLLMNFDENEQVPNDKLVDLVNVKLGCFYELVITTFAGK"
CDS complement(join(105354..105465,105792..105931))
/codon_start=1
/locus_tag="TSUD_38030"
/note="Tsud_chr1.g38040.1.sm.mkhc"
/product="hypothetical protein"
/protein_id="GAU39550.1"
/transl_table=1
/translation="MDGKKLEYKGEEALKEIEKLTKNADEVQESLLKQILTQNRETDY
LNNSGTSAGEPKLMPSIAEDLDRRTFVYNLIMPIMNQLI"
CDS complement(join(119537..119705,120412..120482,
120580..120603,121208..121258,121422..121430))
/codon_start=1
/locus_tag="TSUD_38040"
/note="Tsud_chr1.g38050.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU39551.1"
/transl_table=1
/translation="MVRDTGDSQDAKSPADMTAFVQNLLQQMQSRFQTMSDSIVTKNI
LFGVISIFNVFLDTNALDDMGTRINELEQSINDLRAEMGVESSPSPAAEKPKEEELKK
EEGSD"
CDS join(124486..124569,124668..124878,124994..125115,
126303..126419,126672..126824,126997..127667,
128141..128262,128346..128437,128628..128847,
128973..129039,129155..129303,129410..129480,
129566..129730,129833..129904,130094..130195,
130317..130406,130787..130862,130953..131049,
131172..131241,131380..131559,131881..131964,
132378..132562,132659..132797,132890..132949,
133114..133218,133470..133583)
/codon_start=1
/locus_tag="TSUD_38050"
/note="Tsud_chr1.g38060.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU39552.1"
/transl_table=1
/translation="MVETRRGSSSSSKRPLSSPSPSNTKRSKVSEDASSTTLPSVPVI
KESQPRNESDEPVIQQPPSDLPETASLNVVDADKDKTQPSVPIEDDPLVSSQCPGETA
EKSKVAVAPVVSSRKKRTVAKLVPKVPWGKLISQCSQNPHLSISDPIFTVGQGRQSNL
VLKDPTVGNVLCKLSHIEQQHGGSSVALLEIAGGKGVVQVNGKTYRRNAKVILNGGDE
VIFGASGKHAYHEIQIFQQLKSNNVSSAGIPPSVSILEAQSAAMNGMQVEARSGDPSA
VAGASILASLSNIHKDLSLLSPPARCKKQSADNSSLPSDNGDNSLDSEMKDTTNNDES
AGVFSSGKDVPASSTTGNENPSLDTMDVDANVGADVGKMTAANYELRPLLCMLTGSGT
EFDLSGSINKILEDRKELKDVDNPTILASTRRQAFRDSLEQRILNAENIDVSFETFPY
YLSDTTKNVLIASTYIHLKCNGFGKYASDLPSVCPRILLSGPSGSEIYQETLSKALAK
HFGARLLIVDSLSLPGGTPSKEVESAKESSKPERPSVLSKRSSQTSILHHKKPTSSVD
AEIVGGSTLSSQAMLKQEVSTASSKATALKKGDRVKFVGNFPPVVSSLQNYSSRGPSY
GFRGKVVLAFEDNESSKIGVRFDKSIPDGNDLGGHIEDDHGFFCSANHLQRIESSGGD
DDKVAINEIFEVASNQCKSGALVLFIKDIEKAMVGNTDVLKSKFETLPQNIVVIGSNT
QLDSRKEKTHPGGLLFTKFGSNQTALLDLAFPDNFSKLHDRTKESSKVTKQLSRLFPN
KVTIQLPQEEALLSDWKKQLDRDIETMKAQSNVVMLRLVLKRIGWDCTDLETISIKDQ
TLTTENVEKIIGWAISYHFMHSFEASTEDLKRVISAESIKYGFDIFQGIQNENKNVKK
SLKDVVTENEFEKKLLGDVIPPTELGVTFEDIGALENVKDTLKELVMLPLKRPELFCK
GQLTKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM
VNWDGLRTKEKERILVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNRGKILRVILAK
EDLAPDVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALAENKPEP
ELCSSADIRPLKMEDFKYAHEQVCASVSSESTNMNELQQWNDLYGEGGSRKMRSLSYF
M"
CDS complement(134532..134714)
/codon_start=1
/locus_tag="TSUD_38060"
/note="Tsud_chr1.g38070.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU39553.1"
/transl_table=1
/translation="MVNSHWIHIRIFTSNSSHRITIVPSLPNSKERDASCGGDKSGQR
RMTTTWQKGRGGSGGR"
CDS join(137962..138042,138199..138279,138391..138967,
139175..139886,140348..140507)
/codon_start=1
/locus_tag="TSUD_38070"
/note="Tsud_chr1.g38080.1.au"
/product="hypothetical protein"
/protein_id="GAU39554.1"
/transl_table=1
/translation="MAGKSKFHANLPILNGKNWDTWIKQMKVFEKIADATTSKDAWDI
LQKSYGGDAKMKNCGSTLNEEEMVEKVLRTLTHKFDHIVVTIEQTKDLSEIKMEDLQS
TLEAHELKHGDRNHGNEDEQALFVKFKKYQDEKKKWQNKKGSKKGKESVEDKPESSKK
DKSTIQCYNCDKYGHYASECKTSMKKKSQNSGAEANVAEDGSTSDDDVSFMVTITDEK
ESESHMTENDNGSDQGPLLMMPTTKDEFDVPSNILSIEQLVEKSFTLSLGNNQMKVYN
VENKMVFCASLSQSRTVQVKFENSNSEVLIEKESDKSIKILRTDGASKHTSKESDGEH
QKVHISEDVIMNEVHINEDSESDCNVETDVEAPEVEVSTVEANVETRAGSTKARESDV
EADAEASEAEVLAVEANVETRARSTRTKDWNVETKVEASEVEVNVKTEAISTRKRQVP
ARWQECELADDSRVSKEEGELMQCALLVDEPVTKYKVDRRSTSGYAFKFQNAPVSWCS
KKQSVIALSSCEERSVPEAKKGDENCQL"
CDS join(145079..145247,145376..145494,146896..147102)
/codon_start=1
/locus_tag="TSUD_38080"
/note="Tsud_chr1.g38090.1.am.mk"
/product="hypothetical protein"
/protein_id="GAU39555.1"
/transl_table=1
/translation="MKQVSGDVSSASNPSPPVNESGKRDIQPSDLHQTEKTVDGDNNK
SSEALVSSPQCLESSEIEEKSRALPPLARSKKRCTKSNSKAAWGKLISQSSESPRLQP
FPLLCVSGLFLFSVSVVPLFSVFTDHKVDEELPIVCHKTEPVLILHISWPVAYVITQE
AHEF"
CDS complement(join(148104..148176,148211..148506))
/codon_start=1
/locus_tag="TSUD_38090"
/note="Tsud_chr1.g38100.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU39556.1"
/transl_table=1
/translation="MQQKTDVSPLPAGNGDDKASVDMKHNIINNGPDGVSSAEKTGYP
SSTTTVVICNSAQYGRLSVALLEIIGSKGAVKVNGKTYGNKSRRILSGGDEVVFKYGD
VQQRQVGCGGRRSEVVHKGN"
CDS join(148886..148987,149238..149384,149606..150282,
150462..150583,150939..151193,151290..151356,
151656..151804,151909..151982,152073..152237,
152343..152414,152632..152733,152821..152910,
153266..153341,153455..153551,153676..153745,
153893..154072,154406..154489,154680..154864,
155037..155175,155276..155335,155736..155840,
156162..156275)
/codon_start=1
/locus_tag="TSUD_38100"
/note="Tsud_chr1.g38110.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU39557.1"
/transl_table=1
/translation="MCDDIYTVGQGGHCNLWLKDPTISNVLCKLSHIEYGGSSVALLE
IIGSKGAVKVNGKTCGNKSRLILSGGDEVVFGVSGKQAYIFQQLNNNITTPNIPSPVS
ILEAQGASITGTQVDARSGDLSTVAGDSILASFSNLNEDLSTIPPSVSTGANMQQKTD
VSPLPAGNGDDKASVDMKHNIINNGPDGVSSAEKTGCPSSATIDEDPKDDTVEVNASV
DADVGKMTAATWKLRPLLHKLSGSCPEIDLSGNIAKILEERKGLKELLKDVSTSTILA
SPKQQALKESLQMRILNAENIDVSFENFPYYLSDTTKNVLIASAYIHLKCNASGKYVS
DLPSLSPRILLSGPAVELIVQLNFQRTPLKEVDSTNESLRPERPSVFTKRSTPAATIH
IKSKKPASSVDAQIIGGSASSSQFILKQEVSTASSKGGTLKTGDRVRYVGDFPSAVSS
PQVFPSRGPSYGCRGKVLLAFENNGSSKIGVRFEKSIPDGNDLGGLCEDDRGFFCSAN
HLVLVDGVGGDDSGKAAINEIFEVASNLSKTGALVLLIKDIEKGVAGNSEVLKSKFGS
LPQNVVVIGSHIQPDSRKEKTQPGSLLFTKFGGNQTALLDLAFPDNFTRLHDRSKETP
KVMKQLNRLFPNKVTIQLPQDETLLSDWKQHLDRDIETMKAQSNVVSIRLVLNRFGLD
CPDLETLSIKDQTLTTENVEKIIGWAISYHFMHSSETSTDESKPVISAESIHYGFNIL
QGIQNENRSLKKSLKDVVTENEFEKKLLGDVIPPTDIGVSFDDIGALENVKETLKELV
MLPLQRPELFCKGQLTKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE
HEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAA
NRAKIMRVILAKEELAADVDLEALANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKD
KSSALAENKPLPGLCSSADIRPLKMEDFRYAHEQVCASVSSDSNNMNELVQWNDLYGE
GGSRKKTSLSYFM"
CDS join(158125..158346,158452..158740,158835..158839)
/codon_start=1
/locus_tag="TSUD_38110"
/note="Tsud_chr1.g38120.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU39558.1"
/transl_table=1
/translation="MSIESQIIKPIAKGIVHRICSGQVILDLSSAVKELVENSLDAAA
TSIEIALKDFGEEWFQVIDNGCGISPNSFKVLALKHHTSKLSEFHDLQSLTTFGFRGE
ALSSLCALGDLTIETRTVNEPVATHLTFNHSGVLVAEKKTARQIGTTVTVKKLFSCLP
VRSKEFKRNIQ"
CDS join(159454..160566,160988..161256,161334..161460,
161764..161832,161984..162057,162374..162439,
164839..164942,165290..165477,165638..165760)
/codon_start=1
/locus_tag="TSUD_38120"
/note="Tsud_chr1.g38130.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU39559.1"
/transl_table=1
/translation="MALCISESCKVEGFLSKPGLGNGRNLGDRQYFFVNGRPVDMPKI
GKLVNELYRSANSKQYPIAILNFTVPTKAYDVNVTPDKRKIFFSEETSLLQALREGLQ
QIYSPDNASYAVNEFMQPSVKEDRFEVCSSHKKSPMVTKPSSLNDAIPQEEHYTECKI
GSISRDKNHTDRNNQSISQNEHKDKHATTDSKNASESDDDDVEEGLIHENDGGLMGQE
FTLRAHKTLKGDKSGRQPASTHSALHNQATLVSRSIESGGSSNKYSSDSSRHVQSTLN
NFVSVSKRKRDDIITALSEVPVLRNHAPQCKLKNSNAETNDLITTRSYLHLDQINETS
KLSEIDNLQQLNPDSVYHKSVNLPSVKDDTTDREPNTKPHQENKTDIADTASVTPSSN
DLIHTTEHVLVSDPPIRSSPVRLDSPKSSGQKIFSNMQFSFQDLKIRRDKRLSLMQSS
KYRYGKANGKSHYTAATLELSQPEIEQQKERVLAAAATELERLFKKEDFSRMKVIGQF
NLGFIIGKLDQDLFIVDQHAADEKYNFECLSQSTILNQQPLLRPIRLELSPEEEIVAS
IHMDIIRKNGFALEEDPIAPPGCRYKLKSVPYSKNTMFGIEDVKALISTLSDGDGHGE
CSIIGSYKQDSSDSLCPPRVRAMLASRACRSSIMIGDALGRNEMQKILDHLAELKSPW
NCPHGRPTMRHLVDLSKIHKRSELKMEM"
CDS join(164813..164942,165290..165477,165638..165760)
/codon_start=1
/locus_tag="TSUD_38130"
/note="Tsud_chr1.g38140.1.au"
/product="hypothetical protein"
/protein_id="GAU39560.1"
/transl_table=1
/translation="MRLHYICFRKNGFALEEDPIAPPGCRYKLKSVPYSKNTMFGIED
VKALISTLSDGDGHGECSIIGSYKQDSSDSLCPPRVRAMLASRACRSSIMIGDALGRN
EMQKILDHLAELKSPWNCPHGRPTMRHLVDLSKIHKRSELKMEM"
CDS complement(join(168931..169034,169449..169500,
169586..169620,169715..169868,170177..170363,
171558..171562))
/codon_start=1
/locus_tag="TSUD_38140"
/note="Tsud_chr1.g38150.1.sm.mkhc"
/product="hypothetical protein"
/protein_id="GAU39561.1"
/transl_table=1
/translation="MSRHPEVKWAQRFDKVYITVQLPDSKNAKVDLTPDGVFTFSATA
GAEDHLYELTLPLFDKVNVEESKINVGVRGIFCVVQKAESEWWKRLLKAEGKTPHYVK
VDWDKWVDEDEDAGGDVDLGGMDFSQFGGDDAVGDDFDDFDEGQEFANSKPEIQDGDD
KEGEKAGKSAVEEAPPST"
assembly_gap 174773..175087
/estimated_length=315
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS join(188044..188098,188699..188788,188882..189606,
190764..190850,190939..191568,191722..191886,
191966..192260,192855..193069,193604..193667,
194117..194217)
/codon_start=1
/locus_tag="TSUD_38150"
/note="Tsud_chr1.g38160.1.sm.mkhc"
/product="hypothetical protein"
/protein_id="GAU39562.1"
/transl_table=1
/translation="MSSLYSTWITSFSCSPSSGSTGVIKARGESQLVNDNGEETKLNG
HDDHGYESPLNINDVPHVSPQHRAERMSVIFESKWPKSDERSKHPVRTTLIRCFWKDI
IFTAFLAVIRLSVMFVGPVLIQDFVDFTSGKGSSVYEGYYLVLILLVAKFIEVLTTHH
FNFNSQKLGMLIRCTLITSLYKKGLRLSGSARQDHGVGSIVNYMAVDTQQLSDMMLQL
HAIWMMPFQVGISLFLLYNCLGVSAFTALICLLLVIVFIIVTTRQNKGYQFQAMISRD
SRMKAVNEMLNYMRECVRGALKGKTIVLVTHQVDFLHNVDRIVVMRDGMIVQSGRYND
LLDSGLDFGVLVAAHETSMELVEQGAAVPGENSNKPIISKSTSNNSREANGESNSLDQ
PDSAKGSSKLVKDEERETGKVSFNIYKLYCTEAFGWAGISAVLFLSFLWQASMMASDY
WLAYETSVERADVFNPSLFISVYAIITVVSVLLIVLRSYSVTIFGLKTAQIFFTQILN
SILHAPMAFYDTTPSGRILSRASTDQTNVDIFIPLFINFVVAMYITVISIFIVTCQNS
WPTAFLLIPLVWLNIWYRGYFLSTSRELTRLDSITKAPVIVHFSESISGVMTVRAFRK
QKEFSLENIKRVNSNLRMDFHNFSSNAWLGFRLELLGSLIFCLSALFMVTLPSNIIKP
ENVGLSLSYGLSLNSVLFWAIYMSCFIENKMVSVERIKQFSNIPSEAAWIIKDRSPPP
NWPGQGHVDIKDLQSLDRCQLKDAVASKPEKLDSLGRAKEFDKPSNLLQRQSLFGALV
QEYANRSAGL"
assembly_gap 197050..197456
/estimated_length=407
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS join(198711..198987,199071..199192,199443..199559)
/codon_start=1
/locus_tag="TSUD_38160"
/note="Tsud_chr1.g38170.1.sm.mkhc"
/product="hypothetical protein"
/protein_id="GAU39563.1"
/transl_table=1
/translation="MGRSRRKYKQSRTKVRVGLPKKNPKLHKPAFTIPPKLLQSLAED
PKWDDQGTVTKNYSSFGVVSDPNSLTDSLQAPSIPDDVNDSGSDLEEDDLKSALGKKR
RDGKCSLPQPLTSIQRLHISRLVEKYGDDFQRMMMDIKLNPMQHSVATLEKLCMSYYI
YKDKNPLIVGK"
CDS complement(join(201675..201779,202462..202599,
203018..203326,203437..203643))
/codon_start=1
/locus_tag="TSUD_38170"
/note="Tsud_chr1.g38180.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU39564.1"
/transl_table=1
/translation="MSEIIGCFNQRAQKLLEKHLASGFRKYILMLKGKSKGNHTTLIH
EGGDLVTYALINAVAIRKILKKYDKVHYSKQGQLFKSQAQTMHKEILQSPWLIELMAL
HINLRETKVNHLRETKVNNLGETEANSRKAPALFNQDDKFTFQDDDKPSLACELSDSI
KIDIDLTCSICLDTVFDPVSLTCGHIFCYSCACSAASVSIVDGLKAAHSKQKCPLCRE
AGVYEGAMHLEELNILLGRRYDLFIPFDLFHFGK"
assembly_gap 206784..211117
/estimated_length=4334
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 212809..212891
/estimated_length=83
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS join(216193..216388,216471..216574,217384..217505,
217863..217950)
/codon_start=1
/locus_tag="TSUD_38180"
/note="Tsud_chr1.g38190.1.sm.mkhc"
/product="hypothetical protein"
/protein_id="GAU39565.1"
/transl_table=1
/translation="MATSSDQSEKPQPVMVVAIDESDHSAYALKWTLDYFFNAGNDSV
FKLVLVHARPSATSSVGLAGPVYAGAAEVLPIVDSDLRKIAARVADSAKQLCIKKSVN
NVIVEVVEGDPRNVLCDTVDKYHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCSVM
IVKKPKTKH"
CDS complement(join(219382..219616,219761..219851,
220302..220389,220487..220515,220756..220976,
221064..221179,221378..221636,221965..222052,
222184..222255,222337..222412,222668..222723,
223211..223363,223532..223557,224347..224387,
225116..225880))
/codon_start=1
/locus_tag="TSUD_38190"
/note="Tsud_chr1.g38200.1.au"
/product="hypothetical protein"
/protein_id="GAU39566.1"
/transl_table=1
/translation="MASCKPSSTPVDTKAKLSGSSGNPYHDPTEYRSLVGALQYLTFT
RPDISYAVQQVCLFMHDPKTQHMSALKRIIRYIHGTIDFGLHLYPSSVDKLISYTDAD
WAGCPDTRRSTSGYCVYLGDNLISWSAKRQHTLSRSSAEAEYRGVANVVSESCWLRNL
LLELCCPITKATLVYCDNISAVYLSDNPVQHQRTKHIEMDIHFVREKVARGQVRVLHI
PSRFQIADIFTKGLPLQLFDDFRDSLNIRSPPVSTTGVLYYMSWKHNKMLIKSVSCLS
PGVLLSNGDDKYSRYDFPNEFVFGSGTSAYQVEGAADEDGRTPSIWDTFAHAGFVPGG
NGDIACDVYHKYKEDVQLMVETSLDAYRFSISWSRLIPNGRGPVNPKGLQFYNNLINE
LISNGIQPHVTLYNYDLPQALEDEYEGWLSRDIIKDFTNYADVCFREFGDRVKYWTTV
NEPNIYALGSYDQGITPPQRCSPPFCVIESTKGNSTFEPYLVVHHVLLAHSSAVRLYR
RKYREEQHGFVGISLYTFGIVPLKNTEKDKAACQRIRDFYFGWIMEPLLHGDYPKIMK
ANAGARIPAFTSRESKQVKGSYDFIGIIHYGKFNVTDIPDALKTELRDFNLDSAALLL
ALQDILAEEEYPIAPLALREVLDTFKILYGNPPVFIHENGQRTASNASLHDVSRVEYL
HTYIATVLDSLRNGSNVKGYFAWSFIDALELLDGYKSSFGLYYVDRNDPELTRYPKLS
AKWYSQFLKGTRSSLVGAVELKNDSSLVSVQ"
assembly_gap 225931..228556
/estimated_length=2626
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS join(229775..229991,230260..230273)
/codon_start=1
/locus_tag="TSUD_38200"
/note="Tsud_chr1.g38210.1.am.mk"
/product="hypothetical protein"
/protein_id="GAU39567.1"
/transl_table=1
/translation="MVNRSEKNTIREEQTRSEKKVDSGGDSKCNRRRRFVGSGARLWC
AAAPRRRVVAARWLFTRKKKERVFQFVRSDFD"
CDS complement(join(230575..230821,231017..231107,
231377..231464,231562..231590,231833..232053,
232579..232666,232746..232817,232934..233009,
233089..233144,233570..233789))
/codon_start=1
/locus_tag="TSUD_38210"
/note="Tsud_chr1.g38220.1.au"
/product="hypothetical protein"
/protein_id="GAU39568.1"
/transl_table=1
/translation="MERDKCLILVLFLLLNLAVAVGVLLSNDDDDNYSRYDFPDEFVF
GSGTSAYQVEGAADEDGRTPSIWDTFAHDGFAHGGNGDVACDVYHKYKEDVQLMVETG
LEAFRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISNGIQPHVTLYNYDLPQALED
EYGGWLSRDVMIMEPLLHGDYPKIMKENAGARIPAFTSRESKQVKGSYDFIGIIHYSK
FNGTDIPDALKIELRDFSLDSAAVLLAIQDILTEEEYPIAPLALREVLDTFKILYGNP
PIFIHENGQRTASNASLHDVSRVEYLHAYIGTMLDSLRNGSNIKGYFAWSFIDALELL
DGYKSSFGLYYVDRNDPELTRYPKLSAKWYNQFLKGGRSSQVGAIQLKNDSSLVSVRH
LFQ"
CDS complement(join(239677..239775,239952..239989,
240114..240187,241604..241689,241847..242068))
/codon_start=1
/locus_tag="TSUD_38220"
/note="Tsud_chr1.g38230.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU39569.1"
/transl_table=1
/translation="MTLVIDAVHLLSLYCRCNPTIEFIPVNLTSIIDADIDLWCVFRH
SEPYVAQCVFELLRGLNNVKYLTMSIITLQCLDHTKDTLHLLPVFHNLTHLYVESSSS
KDNYYESSDDEEHEDEHDEDEHDDVRCIIGVLPATALRSHFENLEASRMKISLEEVLW
KAIRFDSLEDML"
assembly_gap 242170..243127
/estimated_length=958
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CONTIG join(BCLP01019553.1:1..33035,gap(141),BCLP01019554.1:1..24825,gap
(63),BCLP01019555.1:1..25571,gap(1010),BCLP01019556.1:1..10777,gap
(2837),BCLP01019557.1:1..76513,gap(315),BCLP01019558.1:1..21962,
gap(407),BCLP01019559.1:1..9327,gap(4334),BCLP01019560.1:1..1691,
gap(83),BCLP01019561.1:1..13039,gap(2626),BCLP01019562.1:1..13613,
gap(958),BCLP01019563.1:1..2480)
//