LOCUS CK334574 582 bp mRNA linear EST 12-MAY-2010
DEFINITION H3056B04-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone
H3056B04 3', mRNA sequence.
ACCESSION CK334574
VERSION CK334574.1
DBLINK BioSample: SAMN00163148
KEYWORDS EST.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 582)
AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X.,
Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H.,
Wood,W.H. III, Becker,K.G. and Ko,M.S.H.
TITLE Genome-wide expression profiling of mid-gestation placenta and
embryo using a 15,000 mouse developmental cDNA microarray
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000)
PUBMED 10922068
COMMENT Contact: Dawood B. Dudekula
Laboratory of Genetics
National Institute on Aging/National Institutes of Health
333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA
Email: cdna@lgsun.grc.nia.nih.gov
Plate: H3056 row: B column: 04
Seq primer: -21M13 Forward
POLYA=Yes.
FEATURES Location/Qualifiers
source 1..582
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="niaEST:H3056B04-3"
/db_xref="taxon:10090"
/clone="H3056B04"
/sex="clones arrayed from a variety of cdna libraries"
/clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set"
/dev_stage="Clones arrayed from a variety of cDNA
libraries"
/lab_host="DH10B"
/note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This
clone is among a rearrayed set of 15,247 clones from 11
embryo cDNA libraries (including preimplantation stage
embryos from unfertilized egg to blastocyst, embryonic
part of E7.5 embryos, extraembryonic part of E7.5 embryos,
and E12.5 female mesonephros/gonad) and one newborn ovary
cDNA library. Average insert size 1.5 kb. All source
libraries are cloned unidirectionally with Oligo(dT)-Not
primers. References include: (1) Genome-wide expression
profiling of mid-gestation placenta and embryo using a
15,000 mouse developmental cDNA microarray, 2000, Proc.
Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale
cDNA analysis reveals phased gene expression patterns
during preimplantation mouse develolpment, 2000,
Development, 127: 1737-1749; (3) Genome-wide mapping of
unselected transcripts from extraembryonic tissue of
7.5-day mouse embryos reveals enrichment in the t-complex
and under-representation on the X chromosome, 1998, Hum
Mol Genet 7: 1967-1978."
BASE COUNT 111 a 154 c 175 g 142 t
ORIGIN
1 gacagtctca agtttttatt cagtgggtct ctgtgtctag aagaaggtgt tgggcctctt
61 ggtggtgaag cgtggcttgt gctggcgccg caacacacgg tggggcagtg ggaatttgat
121 cttggagtcg tggaactgct tgacagctgg ccggcggcac ttgccagctg caatctcttc
181 caccttcatg atctggatgg agtgggcacg ggcacggtgt cgggcaccca tgtctcggta
241 gcactgtgtg actgcaccag cagtggtcag gtccctgtac tcccgataca tgttgtgtgt
301 gccactgcgg gagtcatagc gcagccagat gccaaagttc ttcacacgca ggggtgactt
361 ctcaaacacc tgtccgcagt acacaatttc cccggatgac ttcttcatct tcttcagctg
421 tgacacaaag taccagaagc gggacttggc caccacatgg ttgggtgcaa agattcgcat
481 acggtacagt ggtggtgtgt ggcattttgg ggttggcaag cagcgcccca ccaccttgta
541 ctcccgaagc gtgcccgagg ccttcatggc actgcgcact cg
//