LOCUS BG079415 629 bp mRNA linear EST 26-JAN-2001
DEFINITION H3039E04-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone
H3039E04 5', mRNA sequence.
ACCESSION BG079415
VERSION BG079415.1
DBLINK BioSample: SAMN00163148
KEYWORDS EST.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 629)
AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A.,
Tanaka,T.S., Carter,M.G. and Ko,M.S.H.
TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set
JOURNAL Unpublished
COMMENT Other_ESTs: H3039E04-3
Contact: George J. Kargul
Laboratory of Genetics
National Institute on Aging/National Institutes of Health
333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA
Email: cdna@lgsun.grc.nia.nih.gov
This clone set has been freely distributed to the community. Please
visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details.
Plate: H3039 row: E column: 04
Seq primer: -21M13 Reverse
POLYA=No.
FEATURES Location/Qualifiers
source 1..629
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="niaEST:H3039E04-5"
/db_xref="taxon:10090"
/clone="H3039E04"
/sex="clones arrayed from a variety of cdna libraries"
/clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set"
/dev_stage="Clones arrayed from a variety of cDNA
libraries"
/lab_host="DH10B"
/note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This
clone is among a rearrayed set of 15,247 clones from 11
embryo cDNA libraries (including preimplantation stage
embryos from unfertilized egg to blastocyst, embryonic
part of E7.5 embryos, extraembryonic part of E7.5 embryos,
and E12.5 female mesonephros/gonad) and one newborn ovary
cDNA library. Average insert size 1.5 kb. All source
libraries are cloned unidirectionally with Oligo(dT)-Not
primers. References include: (1) Genome-wide expression
profiling of mid-gestation placenta and embryo using a
15,000 mouse developmental cDNA microarray, 2000, Proc.
Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale
cDNA analysis reveals phased gene expression patterns
during preimplantation mouse develolpment, 2000,
Development, 127: 1737-1749; (3) Genome-wide mapping of
unselected transcripts from extraembryonic tissue of
7.5-day mouse embryos reveals enrichment in the t-complex
and under-representation on the X chromosome, 1998, Hum
Mol Genet 7: 1967-1978."
BASE COUNT 218 a 100 c 89 g 222 t
ORIGIN
1 ttccaagaga tgttaattgg aaaagacctc accttaaact caccacagga gaacctaagc
61 ctttaggtgc tatcaagtga gattcaaatt aactggtgat aaccaaaaag gctttaacag
121 aaagtagagg attcttctat aatctattgg tatcaattac acttggtggt aatcaaatat
181 tagctatata ttctagttat tgttattaaa tgtgtccaca gctattcttt gacaagaaaa
241 aacattaatg taaaatcatc cttcttcacc ttaaagtttt aacatcctat tataaggctg
301 ctgtggtgct aattaagaat taagaattcc ttgttccaaa cagcaattgg ttattgcaga
361 atattgatat ttgacctatt acataccatc attttaaata aaattgatac tcatcctaaa
421 aataagttaa aaattgctta tatgcatgct tttgtttgtt tcttctataa attcatgcat
481 gcatcacatt tactgtattt aataacaacc cacctatggg gaaaagctat atgtgaatta
541 gatcacatgt ttattctttt gagtttctgc ctgcttcagc acagataatt aatttatgtg
601 ctatagatag tgtcttaaaa tattaaaaa
//