LOCUS BE515457 164 bp mRNA linear EST 08-AUG-2000
DEFINITION WHE0613_E10_I19ZA Wheat ABA-treated embryo cDNA library Triticum
aestivum cDNA clone WHE0613_E10_I19, mRNA sequence.
ACCESSION BE515457
VERSION BE515457.1
DBLINK BioSample: SAMN00160090
KEYWORDS EST.
SOURCE Triticum aestivum (bread wheat)
ORGANISM Triticum aestivum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
REFERENCE 1 (bases 1 to 164)
AUTHORS Anderson,O.D., Chao,S., Han,P.S., Hsia,C.C., Johnson,R.R., Kang,Y.,
Lazo,G.R., Miller,R., Rausch,C.J., Seaton,C.L., Tong,J.C.,
Verhey,S.D. and Walker-Simmons,M.K.
TITLE The structure and function of the expressed portion of the wheat
genomes - ABA-treated embryo library
JOURNAL Unpublished
COMMENT Contact: Olin Anderson
US Department of Agriculture, Agriculture Research Service, Pacific
West Area, Western Regional Research Center
800 Buchanan Street, Albany, CA 94710, USA
Tel: 5105595773
Fax: 5105595818
Email: oandersn@pw.usda.gov
Sequence have been trimmed to remove vector sequence and low
quality sequence with phred score less than 20
Seq primer: Clontech Matchmaker 3' AD primer.
FEATURES Location/Qualifiers
source 1..164
/organism="Triticum aestivum"
/mol_type="mRNA"
/cultivar="Brevor (soft, white, winter, common wheat)"
/db_xref="taxon:4565"
/clone="WHE0613_E10_I19"
/tissue_type="Seed embryo"
/clone_lib="SAMN00160090 Wheat ABA-treated embryo cDNA
library"
/dev_stage="Mature dormant seeds"
/lab_host="E. coli DH12S"
/note="Vector: pGAD10; Site_1: EcoRI; Site_2: XhoI;
Embryos were cut from mature, dormant seeds and imbibed in
25 microM ABA (abscisic acid) in 5 mM Mes buffer, pH 5.7,
for 12 hr at 22 C. The tissue, total RNA, and poly(A) RNA
were prepared by Steven Verhey in M.K. Walker-Simmons's
lab (USDA-ARS, Washington State Univ., Pullman, Washington
99164-6420. A cDNA library was made by Clontech using a
combination of random and oligo dT primers. Library was
plated and archived by Russell Johnson (Colby College,
ME/Walker-Simmons' lab). Plasmid DNA preparations and DNA
sequencing were performed in the OD Anderson lab (all
other authors)."
BASE COUNT 41 a 51 c 33 g 39 t
ORIGIN
1 tcgcggccgc gtcgacggca aatgctttcg cagttgttcg tctttcataa atccaagaat
61 ttcacctctg actatgaaat acgaatgccc ccgactgtcc ctattaatca ttactccgat
121 cccgaaggcc aacacaatag gacccgtcga cgcggccgcg aatt
//