LOCUS BC085004 2249 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens KH-type splicing regulatory protein, mRNA (cDNA clone
MGC:99676 IMAGE:6597976), complete cds.
ACCESSION BC085004
VERSION BC085004.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2249)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2249)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: o Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504864.
FEATURES Location/Qualifiers
source 1..2249
/db_xref="H-InvDB:HIT000266093"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:99676 IMAGE:6597976"
/tissue_type="Ovary, teratocarcinoma"
/clone_lib="NIH_MGC_109"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2249
/gene="KHSRP"
/gene_synonym="FBP2"
/gene_synonym="FUBP2"
/gene_synonym="KSRP"
/db_xref="GeneID:8570"
/db_xref="HGNC:HGNC:6316"
/db_xref="MIM:603445"
CDS 75..2207
/gene="KHSRP"
/gene_synonym="FBP2"
/gene_synonym="FUBP2"
/gene_synonym="KSRP"
/codon_start=1
/product="KHSRP protein"
/protein_id="AAH85004.1"
/db_xref="GeneID:8570"
/db_xref="HGNC:HGNC:6316"
/db_xref="MIM:603445"
/translation="MSDYSTGGPPPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGG
PGGGGPGGGSAGGPSQPPGGGGPGIRKDAFADAVQRARQIAAKIGGDAATTVNNSTPD
FGFGGQKRQLEDGDQPESKKLASQGDSISSQLGPIHPPPRTSMTEEYRVPDGMVGLII
GRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGG
PPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN
TNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSV
GVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS
LRSGPPGPPGGPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAI
NQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPLCPVGPGPGG
PGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDPSKAA
AAAADPNAAWAAYYSHYYQQPPGPVPGPAPAPAAPPAQGEPPQPPPTGQSDYTKAWEE
YYKKIGQQPQQPGAPPQQDYTKAWEEYYKKQAQVATGGGPGAPPGFLAPPTVFQPLLS
SALAQLPRPRPSPLPGLVCCLFICSRGD"
BASE COUNT 488 a 737 c 698 g 326 t
ORIGIN
1 cccgcgttga gccgccgccg ccgccgccgc ctcctcagct tcagcctccg cgccaggccc
61 ggccccgccg cgccatgtcg gactacagca cgggaggacc cccgcccggg ccgccgccgc
121 ccgccggcgg gggcggggga gccggaggcg ccgggggagg ccctccgccg ggcccgccag
181 gcgcggggga ccggggcggc ggcggtcccg gcggcggcgg cccgggcggg gggtcggccg
241 ggggcccctc tcagccaccc ggcggaggcg gcccgggaat ccgcaaggac gctttcgccg
301 acgccgtgca gcgggcccgc cagattgcag ccaaaattgg aggcgatgct gccacgacag
361 tgaataacag cactcctgat tttggttttg ggggccaaaa gagacagttg gaagatggag
421 atcaaccgga gagcaagaag ctggcttccc agggagactc aatcagttct caacttggac
481 ccatccatcc tcccccaagg acttcaatga cagaagagta cagggtccca gacggcatgg
541 tgggcctgat cattggcaga ggaggtgaac aaattaacaa aatccaacag gattcaggct
601 gcaaagtaca gatttctcca gacagcggtg gcctacccga gcgcagtgtg tccttgacag
661 gagccccaga atctgtccag aaagccaaga tgatgctgga tgacattgtg tctcggggtc
721 gtgggggccc cccaggacag ttccacgaca acgccaacgg gggccagaac ggcaccgtgc
781 aggagatcat gatccccgcg ggcaaggccg gcctggtcat tggcaagggc ggggagacca
841 ttaagcagct gcaggaacgc gctggagtga agatgatctt aattcaggac ggatctcaga
901 atacgaatgt ggacaaacct ctccgcatca ttggggatcc ttacaaagtg cagcaagcct
961 gtgagatggt gatggacatc ctccgggaac gtgaccaagg cggctttggg gaccggaatg
1021 agtacggatc tcggattggc ggaggcatcg atgtgccagt gcccaggcat tctgttggcg
1081 tggtcattgg ccggagtgga gagatgatca agaagatcca gaatgatgct ggcgtgcgga
1141 tacagttcaa gcaagatgac gggacagggc ccgagaagat tgctcatata atggggcccc
1201 cagacaggtg cgagcacgca gcccggatca tcaacgacct cctccagagc ctcaggagtg
1261 gtcccccagg tcctccaggg ggtccaggca tgcccccggg gggccgaggc cgaggaagag
1321 gccaaggcaa ttggggtccc cctggcgggg agatgacctt ctccatcccc actcacaagt
1381 gtgggctggt catcggccga ggtggcgaga atgtgaaagc cataaaccag cagacgggag
1441 ccttcgtaga gatctcccgg cagctgccac ccaacgggga ccccaacttc aagttgttca
1501 tcatccgggg ttcaccccag cagattgacc acgccaagca gcttatcgag gaaaagatcg
1561 agggtcctct ctgcccagtt ggaccaggcc caggtggccc aggccctgct ggcccaatgg
1621 ggcccttcaa tcctgggccc ttcaaccagg ggccacccgg ggctccccca catgccgggg
1681 ggccccctcc tcaccagtac ccaccccagg gctggggcaa tacctacccc cagtggcagc
1741 cgcctgctcc tcatgaccca agcaaagcag ctgcagcggc cgcggacccc aacgccgcgt
1801 gggccgccta ctactcacac tactaccagc agcccccggg ccccgtcccc ggccccgcac
1861 cggcccctgc ggccccaccg gctcagggtg agccccctca gcccccaccc accggccagt
1921 cggactacac taaggcctgg gaagagtatt acaaaaagat cggccagcag ccccagcagc
1981 ccggagcgcc cccacagcag gactacacga aggcttggga ggagtactac aagaagcaag
2041 cgcaagtggc caccggaggg ggtccaggag ctcccccagg cttcctggcc ccccccacgg
2101 tgttccagcc cctcctctct tccgccctgg ctcagctccc gcggccccgc ccgtcccccc
2161 tcccaggact ggtctgttgt cttttcatct gttcaagagg agattgaaac tgaaaacaaa
2221 atgagaacaa caaaaaaaaa aaaaaaaaa
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