LOCUS BC084578 2160 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens agrin, mRNA (cDNA clone IMAGE:5727776), partial cds.
ACCESSION BC084578
VERSION BC084578.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2160)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2160)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (12-OCT-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: a Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2160
/db_xref="H-InvDB:HIT000266086"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5727776"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_124"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..>2160
/gene="AGRN"
/gene_synonym="FLJ45064"
/db_xref="GeneID:375790"
/db_xref="MIM:103320"
CDS <1..>2160
/gene="AGRN"
/gene_synonym="FLJ45064"
/codon_start=3
/product="AGRN protein"
/protein_id="AAH84578.1"
/db_xref="GeneID:375790"
/db_xref="MIM:103320"
/translation="ACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVAL
AQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQCVC
PRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGE
DGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARC
ESQRGLYVAAQGACRGPTFAPLPPVAPLHCAQTPYGCCQDNITAARGVGLAGCPSACQ
CNPHGSYGGTCDPATGQCSCRPGVGGLRCDRCEPGFWNFRGIVTDGRSGCTPCSCDPQ
GAVRDDCEQMTGLCSCKPGVAGPKCGQCPDGRALGPAGCEADASAPATCAEMRCEFGA
RCVEESGSAHCVCPMLTCPEANATKVCGSDGVTYGNECQLKTIACRQGLQISIQSLGP
CQEAVAPSTHPTSASVTVTTPGLLLSQALPAPPGALPLAPSSTAHSQTTPPPSSRPRT
TASVPRTTVWPVLTVPPTAPSPAPSLVASAFGESGSTDGSSDEELSGDQEASGGGSGG
LEPLEGSSVATPGPPVERASCYNSALGCCSDGKTPSLDAEGSNCPATKVFQGVLELEG
VEGQELFYTPEMADPKSELFGETARSIESTLDDLFRNSDVKKDFRSVRLRDLGPGKSV
RAIVDVHFDPTTAFRAPDVARALLRQIQVSRRRSLGV"
BASE COUNT 335 a 721 c 739 g 365 t
ORIGIN
1 cggcctgtac cctcgggcgg gagatccagg tggcgcgcaa aggaccctgt gaccgctgcg
61 ggcagtgccg ctttggagcc ctgtgcgagg ccgagaccgg gcgctgcgtg tgcccctctg
121 aatgcgtggc tttggcccag cccgtgtgtg gctccgacgg gcacacgtac cccagcgagt
181 gcatgctgca cgtgcacgcc tgcacacacc agatcagcct gcacgtggcc tcagctggac
241 cctgtgagac ctgtggagat gccgtgtgtg cttttggggc tgtgtgctcc gcagggcagt
301 gtgtgtgtcc ccggtgtgag caccccccgc ccggccccgt gtgtggcagc gacggtgtca
361 cctacggcag tgcctgcgag ctacgggaag ccgcctgcct ccagcagaca cagatcgagg
421 aggcccgggc agggccgtgc gagcaggccg agtgcggttc cggaggctct ggctctgggg
481 aggacggtga ctgtgagcag gagctgtgcc ggcagcgcgg tggcatctgg gacgaggact
541 cggaggacgg gccgtgtgtc tgtgacttca gctgccagag tgtcccaggc agcccggtgt
601 gcggctcaga tggggtcacc tacagcaccg agtgtgagct gaagaaggcc aggtgtgagt
661 cacagcgagg gctctacgta gcggcccagg gagcctgccg aggccccacc ttcgccccgc
721 tgccgcctgt ggccccctta cactgtgccc agacgcccta cggctgctgc caggacaata
781 tcaccgcagc ccggggcgtg ggcctggctg gctgccccag tgcctgccag tgcaaccccc
841 atggctctta cggcggcacc tgtgacccag ccacaggcca gtgctcctgc cgcccaggtg
901 tggggggcct caggtgtgac cgctgtgagc ctggcttctg gaactttcga ggcatcgtca
961 ccgatggccg gagtggctgt acaccctgca gctgtgatcc ccaaggcgcc gtgcgggatg
1021 actgtgagca gatgacgggg ctgtgctcgt gtaagcccgg ggtggctgga cccaagtgtg
1081 ggcagtgtcc agacggccgt gccctgggcc ccgcgggctg tgaagctgac gcttctgcgc
1141 ctgcgacctg tgcggagatg cgctgtgagt tcggtgcgcg gtgcgtggag gagtctggct
1201 cagcccactg tgtctgcccg atgctcacct gtccagaggc caacgctacc aaggtctgtg
1261 ggtcagatgg agtcacatac ggcaacgagt gtcagctgaa gaccatcgcc tgccgccagg
1321 gcctgcaaat ctctatccag agcctgggcc cgtgccagga ggctgttgct cccagcactc
1381 acccgacatc tgcctccgtg actgtgacca ccccagggct cctcctgagc caggcactgc
1441 cggccccccc cggcgccctc cccctggctc ccagcagtac cgcacacagc cagaccaccc
1501 ctccgccctc atcgcgacct cggaccactg ccagcgtccc caggaccacc gtgtggcccg
1561 tgctgacggt gccccccacg gcaccctccc ctgcacccag cctggtggcg tccgcctttg
1621 gtgaatctgg cagcactgat ggaagcagcg atgaggaact gagcggggac caggaggcca
1681 gtgggggtgg ctctgggggg ctcgagccct tggagggcag cagcgtggcc acccctgggc
1741 cacctgtcga gagggcttcc tgctacaact ccgcgttggg ctgctgctct gatgggaaga
1801 cgccctcgct ggacgcagag ggctccaact gccccgccac caaggtgttc cagggcgtcc
1861 tggagctgga gggcgtcgag ggccaggagc tgttctacac gcccgagatg gctgacccca
1921 agtcagaact gttcggggag acagccagga gcattgagag caccctggac gacctcttcc
1981 ggaattcaga cgtcaagaag gatttccgga gtgtccgctt gcgggacctg gggcccggca
2041 aatccgtccg cgccattgtg gatgtgcact ttgaccccac cacagccttc agggcacccg
2101 acgtggcccg ggccctgctc cggcagatcc aggtgtccag gcgccggtcc ttgggggtga
//