LOCUS BC084545 2712 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens LysM, putative peptidoglycan-binding, domain
containing 4, mRNA (cDNA clone MGC:99501 IMAGE:4590701), complete
cds.
ACCESSION BC084545
VERSION BC084545.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2712)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2712)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-OCT-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: d Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40288200.
FEATURES Location/Qualifiers
source 1..2712
/db_xref="H-InvDB:HIT000266054"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:99501 IMAGE:4590701"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2712
/gene="LYSMD4"
/gene_synonym="FLJ33008"
/db_xref="GeneID:145748"
/db_xref="HGNC:HGNC:26571"
/db_xref="IMGT/GENE-DB:26571"
/db_xref="MIM:26571"
CDS 77..967
/gene="LYSMD4"
/gene_synonym="FLJ33008"
/codon_start=1
/product="LYSMD4 protein"
/protein_id="AAH84545.1"
/db_xref="GeneID:145748"
/db_xref="HGNC:HGNC:26571"
/db_xref="IMGT/GENE-DB:26571"
/db_xref="MIM:26571"
/translation="MRHEELLTKTFQGPAVVCGTPTSHVYMFKNGSGDSGDSSEEESH
RVVLRPRGKERHKSGVHQPPQAGAGDVVLLQRELAQEDSLNKLALQYGCKVADIKKVN
NFIREQDLYALKSVKIPVRNHGILMETHKELKPLLSPSSETTVTVELPEADRAGAGTG
AQAGQLMGFFKGIDQDIERGVQSEIFLHESYCMDTSHQPLLPAPPKTPMDGADCGIQW
WNAVFIMLLIGIVLPVFYLVYFKIQASGETPNSLNTTVIPNGSMAMGTVPGQAPRLAV
AVPAVTSADSQFSQTTQAGS"
BASE COUNT 641 a 672 c 762 g 637 t
ORIGIN
1 ttcgggcacg aggggggcct ggacgagggg gccgcggtct ggctagggag ccgcgcgggc
61 tcatggcgtg aagaaaatga ggcacgagga attgttaacc aagaccttcc aaggcccagc
121 tgttgtgtgt gggactccga ccagccacgt atacatgttt aagaatggca gtggggactc
181 gggggactct tctgaagaag agtctcaccg tgtggttttg cggccccggg gcaaggagcg
241 ccacaagagc ggtgtccacc agcctcccca ggcgggagca ggtgacgtgg tgctgctgca
301 gcgggagctg gcccaggagg acagcctcaa caagctggcg ctgcagtatg gctgcaaagt
361 tgcagatatc aagaaagtca acaacttcat cagagaacaa gacttatatg ctttgaaatc
421 tgttaagatt ccagtgagaa accatgggat cctgatggag acccacaaag aactgaaacc
481 ccttctgagc ccgtcttccg agaccacagt gaccgtggaa ctgccagagg cagacagagc
541 aggcgcgggc accggtgccc aggccggcca actgatgggc ttctttaagg ggattgacca
601 ggatattgag cgtggagtgc agtcagaaat ctttctacat gaaagttact gcatggacac
661 ctcccatcag ccactgctcc cggcacctcc gaagacgcct atggatggtg cagattgtgg
721 cattcagtgg tggaatgctg ttttcatcat gctgctgatt ggtattgtct tgcctgtctt
781 ttatttggtc tactttaaaa tacaagctag tggtgagacc cctaatagct tgaacacaac
841 tgtcatcccc aatggctcga tggcaatggg tacagttcca gggcaagccc ccagactagc
901 agttgcagtg ccagccgtca cttctgcaga cagccagttc agtcagacca cccaagcggg
961 gagctaagct ttgtttttaa agactcggcc cagctttagc aattggctgt tgatgtgcct
1021 cagctgtcac tggcgatgtc ctaggggtgc tgcattttgc ttccggggaa ggatggacac
1081 ttttcagaag tcactgcagt attcccaatt gcactggccc tgggcatggc cttacccagt
1141 ctaagctggc aggatctaaa acagcagcga cctcggcccc tatccagaga ggtgcagcaa
1201 gagagccatt tccctgtgac atttagtgga ctggccagtt catagcagca ctgtgaggac
1261 ccccaagttg gacgtgctcg gagggaaaga tttatggcct ctgtcgaggg acctgcagcg
1321 tgagagccag tggcatctgc gcggcttgcc tggctcttgc tgtatcctca cttcctgtgg
1381 agcggggatt ggctctgaga aggagtgttc tctgtctgcc tggcaaaggt gctgtggaat
1441 aggcttggca tgccaccctg ttttagagag tgacagttac agttgtaaca agcctacttc
1501 atattggccc cctcagttag cctttttgag gcaatgccat ttctagagtt gaaaaagccc
1561 tggacccaaa ctgcggcact gttgaataaa gggcagtcct actcctgtcc ttttagagtg
1621 gcttagtgtg acacacaggc atctcccagg ccaagcacac acaggctgcg cccagttccg
1681 caggagccgt cccacagcgt ggctctctgg gttctcccac ttgtcctcct tggaaggagc
1741 tcttgctggc cagtgtttgg aggggaggat gagtgcctgt cactgaggcc tcactatggt
1801 tggcgtctga agctgggcgg tcgtcaggcc tgtgctgaga gccgcagccc ctgtgcacac
1861 ctaacacagg gcgctccccc tgctgcttcc ctggctcagt tcttcggagc tccagagtga
1921 gaaggccgct tcgtcctttt tctctgggtg atgcccttag aataacacta tatgcaatgt
1981 aactcacaat gttccaggac caaagacttg atggaggggc tagaggcgac ccttgttgta
2041 aaaggcgatc agaacacctg agggaggaag gggcttgcag ttttcccagc ccttctcgct
2101 gccaaggcag cagtggtgct gtggatgggc tggggactgc gggacagagc ctgctactac
2161 ttgggagttg gtgctgccct gtggcatgga ggggtgggag gggctgagat ggctgctggc
2221 ctggcctcca agagttctgg acaggaggca gacactgccc agatgctcgg tggagggaca
2281 gtgatggcct ttgactcatg aggcctagag aaaagtatca aaggtctcac catgtaagag
2341 tgatttccga tttctctcct ttcagttgtg tgaaaaaaca gctggcctgg gttccattag
2401 caaattaaat catcttcaat cttaaattag agaccagaat gatcttcagg ataaaaagaa
2461 cttctgaatc tctgcaatag gaaatgtttc gatcatgcaa gtgctttccc agccaaatgt
2521 ctgtgctctc tgtgtcactg agggccacag gttcctctaa catctgtcac tgtcacttca
2581 ccaggcaggc cttggagttc catgacaaaa tcacttttgt cagacaaaga atgtatcctt
2641 tacttttctc aaatggaata aaattatttc ttctgtggaa aaaaaaaaaa aaaaaaaaaa
2701 aaaaaaaaaa aa
//